Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 721 a.a., Type I secretion system ATPase, LssB family LapB from Pseudomonas fluorescens FW300-N2E2

 Score =  576 bits (1484), Expect = e-168
 Identities = 299/698 (42%), Positives = 459/698 (65%), Gaps = 2/698 (0%)

Query: 3   DTLLNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQI 62
           D LL+ L+ +   +    S   L  GLPL   +L+  L  R+A RAGL  +  +  L+QI
Sbjct: 23  DPLLDGLLALCMLHQKPASAAMLTTGLPLPKQRLSVELLSRAAARAGLQGRVLQRKLEQI 82

Query: 63  PHLVFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVK 122
           P +  P +LLLK G + VL     + Q A ++ +ES    V  S   L   Y G+ F  +
Sbjct: 83  PTIAMPALLLLKDGRSAVLLGWVGDDQ-ARLLLSESDGGEVTISRELLADDYSGKVFFAQ 141

Query: 123 KQFRFDERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKV 182
            Q +FD     ++ PR   WF  T+ +S+ +Y D + ASLLIN+ A+AAP+F   VYD+V
Sbjct: 142 PQHKFDVNHGTLI-PRARSWFRDTLKRSRWLYADAIAASLLINIIAMAAPLFVMNVYDRV 200

Query: 183 VPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEA 242
           VPN A  TLWVL+ GI+  ++FD + KMLRS  +D+AGKK+D++IS+ LF +++G+ M+ 
Sbjct: 201 VPNQAESTLWVLAVGIIGAYVFDLILKMLRSLCLDLAGKKTDLIISATLFERIVGMSMKY 260

Query: 243 RPPSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLI 302
           RP  VG+FA+++ EF+S+R+F  S T++SLIDLPF LL  ++I ++ GHLVW+PV+   I
Sbjct: 261 RPARVGSFAQNIHEFQSLRDFLASLTLTSLIDLPFTLLIFMVIAIIGGHLVWIPVLAFPI 320

Query: 303 LVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHM 362
            ++  + +Q  L   +E    L +++ ++LIE+LAGL+ VK+  A+ + QY+WE+ +  +
Sbjct: 321 ALLIGYALQKPLVATMERTMALGAERQSSLIETLAGLDAVKVNNAESERQYQWEQTIGTL 380

Query: 363 ANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGP 422
           +   ++ + ++    N    +QQ A + MI+ GVYLI  G+L+MGGL+A  MLSGRA+ P
Sbjct: 381 SRLELRVKMLSGLAMNITLLIQQLAGVIMIVFGVYLIIAGNLSMGGLVACYMLSGRALSP 440

Query: 423 LVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSP 482
           L  LS L TRY QA+ +MT ++Q+M +P E+   +R + R ++QG +E  ++ F YPN  
Sbjct: 441 LASLSGLLTRYQQARVTMTSVDQMMELPQERNFDERPLSRKVLQGAVECRQLNFTYPNQQ 500

Query: 483 IASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDI 542
             ++++++L I PGEK+ IIGR GSGK++L +L++GLY+P +G + +D  DI Q+   ++
Sbjct: 501 NPALKNINLVIKPGEKIGIIGRSGSGKSSLAKLLVGLYQPDDGALLVDGVDIRQIDVSEL 560

Query: 543 RRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGE 602
           R NIG VPQD  L  G++RDN+T G    +D  V+ AA  AGV  F +  P G E QVGE
Sbjct: 561 RYNIGYVPQDIQLLAGTLRDNLTSGARYVEDELVLQAAELAGVHEFARLHPQGYELQVGE 620

Query: 603 GGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILIT 662
            G  LSGGQRQ+V++ARA L  PP+LL+DEPTSAMDN  E  +KQ+L+ +  ++T++L+T
Sbjct: 621 RGQNLSGGQRQNVALARALLLNPPILLLDEPTSAMDNTGEERLKQRLAAVVENKTVLLVT 680

Query: 663 HKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQGNV 700
           H+ S+L +VDR++V+++G I+ADGPK  V+  L++G +
Sbjct: 681 HRASLLSLVDRLLVIDRGQILADGPKAAVMEALKKGQI 718