Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  191 bits (484), Expect = 1e-52
 Identities = 133/406 (32%), Positives = 215/406 (52%), Gaps = 18/406 (4%)

Query: 292 LVWVPVIGVLIL-VIYSFLIQSR-LKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQG 349
           L  +PVI +L+      F  QS+ ++ A+ + + +AS       E++ G   V+ FG + 
Sbjct: 177 LAILPVIAILVSSASKKFRKQSKKIQVAMGDVTHVAS-------ETIQGYRVVRSFGGES 229

Query: 350 QFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGM-IIVGVYLISNGDLTMGG 408
               R+ +A A   N ++   R T SI      +Q    IGM +++ + L   GD + G 
Sbjct: 230 YEIERFHKASADNMNRSLGMTR-TQSIYTP--MLQLVIYIGMAVLMYLVLYLRGDASAGE 286

Query: 409 LIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGK 468
           L+A    +G    P+ QLS +S    +  ++   I + +    E + G + + R  + G+
Sbjct: 287 LVAYITAAGLLPKPIRQLSEVSATIQKGLAAADSIFEQLDEEPEVDTGTKEMAR--VNGR 344

Query: 469 IELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVR 528
           +E+  ++F YP +    + D+S T   G+ +A++GR GSGK+TL  LI   Y   +G + 
Sbjct: 345 LEVRNLSFQYPGTEKIVLDDISFTAEEGQMIALVGRSGSGKSTLANLIPRFYHHDQGQIL 404

Query: 529 IDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDD--REVMDAANRAGVT 586
           +D  D+ Q    ++RR+I  V Q   LF  S+ +NI  G  L+D     V  AA  A   
Sbjct: 405 LDGVDVEQYKLTNLRRHIALVTQQVTLFNDSVTNNIAYG-DLADAPFESVRKAAEDAYAA 463

Query: 587 VFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIK 646
            F +Q P G +  VGE G+LLSGGQRQ ++IARA L   P+L++DE TSA+D  SE HI+
Sbjct: 464 EFIEQMPQGYDTLVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQ 523

Query: 647 QQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEVL 692
             L Q+    T ++I H+ S ++  D +++M+KG I+  G   E+L
Sbjct: 524 AALDQVIKGRTTLVIAHRLSTIEKADLILLMDKGRIVERGTHAELL 569