Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC-type multidrug transport system, ATPase and permease components from Pseudomonas stutzeri RCH2

 Score =  190 bits (483), Expect = 2e-52
 Identities = 128/415 (30%), Positives = 213/415 (51%), Gaps = 12/415 (2%)

Query: 279 LLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLK--RAIEEGSRLASQKYANLIESL 336
           +L  V + +    +++V ++ VLI     F I+ R K  R   + +R+  +    L++++
Sbjct: 171 VLLTVDVRMAVALILFVAIVAVLIT---GFGIRGRYKHQRFAAQSARVGGE----LVDAV 223

Query: 337 AGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGV 396
           + + T+K F A+ +   R    +   A    +S    +  +            GM+I  +
Sbjct: 224 SNVWTIKAFSARDREAERLAHEIGFEARAQRRSWMYLEKARVMHDICLSVMAGGMLIWAI 283

Query: 397 YLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEG 456
            L   G++T G ++  + L+ R +     L+L      Q   ++    +++  P   ++ 
Sbjct: 284 QLWVGGEVTAGDVVLVSALTFRILHGSRDLALALVDATQQIGAIDDTLRIIVQPHGLDDS 343

Query: 457 KRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLI 516
              +   + +G I  +R+ F YP+   A    L L I  G+KV ++G  G+GK+TL  LI
Sbjct: 344 DNQLM--LAEGDITFERIGFSYPDRG-AVFEGLDLHIPAGQKVGVVGSSGAGKSTLINLI 400

Query: 517 MGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREV 576
             L    +G + ID  DI  +    +R  I  VPQ++ LF  SIR+NI  GRP + D EV
Sbjct: 401 QRLDDVQDGRILIDGQDIRSVSQDSLREKIAVVPQETALFNRSIRENIRYGRPDASDEEV 460

Query: 577 MDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSA 636
           + AA  A    F ++ P G +  VGE G++LSGGQRQ + IARAFL   P+L++DE TSA
Sbjct: 461 VAAARSAFCDGFIRELPQGYDTLVGERGVMLSGGQRQRLGIARAFLKDAPILILDEATSA 520

Query: 637 MDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEV 691
           +D +SE  I+  L+ L  + T++ + H+ S L   DR+IV+  G I+ DGP  E+
Sbjct: 521 LDTQSEGEIQAALNNLVHNRTVVAVAHRLSTLASFDRIIVLRDGRIVEDGPPQEL 575