Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., lipid A export permease/ATP-binding protein MsbA from Pseudomonas stutzeri RCH2

 Score =  194 bits (494), Expect = 8e-54
 Identities = 132/421 (31%), Positives = 216/421 (51%), Gaps = 20/421 (4%)

Query: 280 LFLVLIWLMAGHLVW-VPVIGVLILVIYSFLIQSRLKRAIEEGSR--LASQKYANLI-ES 335
           LF  L+W+      W + ++ + IL +  F++ S  K+  ++  +  LA     ++  E+
Sbjct: 173 LFATLLWMN-----WKLTLVMLAILPVIGFMVSSASKKFRKQSKKIQLAMGDVTHVASET 227

Query: 336 LAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVG 395
           + G   V+ FG +   + R+    A   N   + R +  +   T        +   +++ 
Sbjct: 228 IQGYRVVRSFGGEPYERNRF--LTASSENTAKQLRMVKTNAVYTPSLQLVIYSAMAVLMF 285

Query: 396 VYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEE 455
           + L+  GD + G L+A   L+G    P+ QLS +S+   +  +    I + +    E ++
Sbjct: 286 LVLLLRGDASAGDLVAYITLAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDEEPEIDQ 345

Query: 456 GKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERL 515
           G   + R  + G +E+  + F YP +    +RD+S TI PG+ VA++GR GSGK+TL  L
Sbjct: 346 GT--LEREAVSGHLEVRNLDFVYPGTDKQVLRDISFTIEPGQMVALVGRSGSGKSTLANL 403

Query: 516 IMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLG----RPLS 571
           I   Y    G + +D  D+      ++RR+I  V Q   LF  ++ +NI  G     PL 
Sbjct: 404 IPRFYHHEAGQILLDGADVESYTLRNLRRHIALVTQQVTLFNDTVANNIAYGDLAGAPLD 463

Query: 572 DDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMD 631
           D R    AA  A    F +Q P G +  VGE G+LLSGGQRQ ++IARA L   PVL++D
Sbjct: 464 DIRR---AARDAYADEFIEQMPEGYQTLVGENGVLLSGGQRQRLAIARALLKNSPVLILD 520

Query: 632 EPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEV 691
           E TSA+D  SE HI+  L  +    T ++I H+ S ++  D+++VME+G I+  G   E+
Sbjct: 521 EATSALDTESERHIQGALDHVMQGRTTLVIAHRLSTIEKADQILVMEQGRIVERGTHAEL 580

Query: 692 L 692
           L
Sbjct: 581 L 581