Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., Type I secretion system ATPase, PrtD from Pseudomonas syringae pv. syringae B728a

 Score =  212 bits (540), Expect = 4e-59
 Identities = 151/557 (27%), Positives = 280/557 (50%), Gaps = 18/557 (3%)

Query: 147 IYKSKHIYRDVLIA----SLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIF 202
           +YK+   Y+  LI     + LIN+  +A  ++   VYD+V+ +    TL +L+  ++  F
Sbjct: 12  LYKALADYKSALIGVGCFTALINVLMLAPSIYMLQVYDRVLTSQNQTTLAMLTLMVVGFF 71

Query: 203 LFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIRE 262
            F  + +M+RS+ +   G + +   + +++       + A     G   + L +   IR+
Sbjct: 72  AFIGLLEMVRSFVVIRIGSELEKRFNLRVYQAAFESNLHAGQRQAG---QALGDLTFIRQ 128

Query: 263 FFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGS 322
           F T   + +  D P+  ++L +I+L    L  +  +G ++LV  + L +   ++ + E S
Sbjct: 129 FLTGPALFAFFDAPWFPIYLAVIFLFDPWLGVLASVGTVLLVGLACLNEWLTRKPLAEAS 188

Query: 323 RLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAH---MANWNIKSRRITDSIQNT 379
             + Q        L   E ++  G     + RW         + N    +  +  SI   
Sbjct: 189 GYSQQSAQLATRHLQQAEAIQAMGMLEVLRRRWFHVHGRFLALQNRASDTGAVISSISKA 248

Query: 380 AGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSS 439
                Q+  +G+   G  L+ NGD+T G +IA ++L GR + P+ QL  +  +++ A+ +
Sbjct: 249 LRLCLQSLVLGL---GALLVINGDMTAGMMIAGSILMGRVLSPIDQLIAVWKQWSSARLA 305

Query: 440 MTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKV 499
              ++Q++       E    +  P  +G+I  ++V+   P     +++ +S  +  GE +
Sbjct: 306 YGRLDQLLKT---YAEPAPRMPLPAPRGQISAEQVSAAPPGKTSPTIQQVSFQLQAGEVL 362

Query: 500 AIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGS 559
            ++G  GSGK+TL R+++G++    G VR+D  D+ +     +   IG +PQD  LF GS
Sbjct: 363 GVLGASGSGKSTLARVLVGVWPALGGTVRLDGADMHRWDREALGPYIGYLPQDIELFGGS 422

Query: 560 IRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIAR 619
           + +NI   R   D   V+ AA  AGV     + P G + ++G+ G  LSGGQ+Q V++AR
Sbjct: 423 VAENIARFRE-GDASAVVAAAQLAGVHELILRLPQGYDTRLGDDGAGLSGGQKQRVALAR 481

Query: 620 AFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSE-TLILITHKTSMLDVVDRVIVME 678
           A  G P ++++DEP S +D   E  + Q +++LK    T++L+TH+T  L+  DR++V+ 
Sbjct: 482 ALYGDPRLVVLDEPNSNLDAAGEAALTQAIAELKTRGCTVVLVTHRTQSLNQTDRLLVLS 541

Query: 679 KGCIIADGPKHEVLNDL 695
           +G + A G   +VL  L
Sbjct: 542 EGRMQAFGATAQVLQAL 558