Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., Type I secretion system ATPase, PrtD from Pseudomonas syringae pv. syringae B728a

 Score =  204 bits (520), Expect = 8e-57
 Identities = 144/550 (26%), Positives = 267/550 (48%), Gaps = 17/550 (3%)

Query: 161 SLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAG 220
           SL +N   +   ++   V  +VVP+ +  TL +L+  + V+ +     + +RS  +    
Sbjct: 27  SLFVNALMLVPTLYMIQVSGRVVPSSSTPTLIMLTLIMTVLMITMGSLEWVRSRIMVRIS 86

Query: 221 KKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATISSLIDLPFALL 280
            K D+L+S  ++      R   R   + A A+ L +  S+R+F T   + +  D P+  +
Sbjct: 87  NKLDVLLSRDVYQA--SFRKALRSGGMDASAQSLNDLTSLRQFLTGNGLFAFFDAPWLPI 144

Query: 281 FLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLE 340
           +  ++++      W+ V   ++LV+ ++L      +A+ E ++ +        ++L   E
Sbjct: 145 YTAVMFIFHPWFGWMTVGSAIVLVVLAYLNHRFTGKALTEANQQSLTANLLTTKNLRNAE 204

Query: 341 TVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLIS 400
            ++  G       RW +    +      +   + +I + +   +  A   M+ +G YL+ 
Sbjct: 205 VIESMGMLDTLMARWGKRQRRVLVLQSDASDKSGTISSISRTFRNWAQSIMLALGAYLVI 264

Query: 401 NGDLTMGGLIAATMLSGRAIGPLVQL-----SLLSTRYNQAKSSMTIIEQVMSMPDEQEE 455
              +  G ++A ++L GRA+ P+ Q+       ++ R    + S T+ E++ + PD    
Sbjct: 265 THQINPGLMMAGSLLLGRALSPVDQIINTWKGFVAARVQYTRLSETL-EKLHNEPDRMA- 322

Query: 456 GKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERL 515
                  P  +G I+++ +    P      +R++S     G  V I+G   +GK+TL R 
Sbjct: 323 ------LPDPEGHIQVENLVVTPPGGKNPVIRNISFVTPAGTIVGIVGPSAAGKSTLVRA 376

Query: 516 IMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDRE 575
           ++G++    G VR+D  DIS      +  ++G +PQD  LF GSI DNI     + D  +
Sbjct: 377 LLGIWPAQHGTVRLDGADISAWDKQKLGPHLGYLPQDIELFEGSISDNIARFAKV-DPEK 435

Query: 576 VMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTS 635
           V+ AA  AGV     Q P G +  +G  G+ LSGGQRQ + +ARA  G P ++++DEP S
Sbjct: 436 VVLAARTAGVHEMILQLPDGYDTVIGSDGVNLSGGQRQRIGLARAIYGSPRLIVLDEPNS 495

Query: 636 AMDNRSEMHIKQQLSQLKPS-ETLILITHKTSMLDVVDRVIVMEKGCIIADGPKHEVLND 694
            +D   E  +   L  +K S  T+ +++H+ ++L  +DRV+VM  G I   G + +V+ +
Sbjct: 496 NLDEVGERALSVALQLIKESGATVFIVSHRPNILSRLDRVMVMSAGTITLYGARDQVIAE 555

Query: 695 LRQGNVRAVQ 704
           L Q   +A Q
Sbjct: 556 LAQQQAKAQQ 565