Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  309 bits (792), Expect = 4e-88
 Identities = 178/561 (31%), Positives = 315/561 (56%), Gaps = 11/561 (1%)

Query: 142 WFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVI 201
           WFW +I + +    +VLIASL++ LF +A P+  + V DKV+   +   L   +  ++++
Sbjct: 431 WFWPSIQRYRVRLIEVLIASLVVQLFTLANPLIIQQVIDKVIGQGSLNNLNSFAVLLVIL 490

Query: 202 FLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRM---EARPPSVGAFARHLQEFE 258
            +F  +   LR+Y       + D+ + S +  +++ + +   E RP  VG  +  +QE E
Sbjct: 491 GVFQGLLSSLRTYLFADTTNRIDLKLGSDIIDRLLKLPLRYFERRP--VGELSSRVQELE 548

Query: 259 SIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAI 318
            IR F T   +++++D  F++++++++ + +  L  V +  V I V  +F     ++R +
Sbjct: 549 KIRSFLTGTALTTVMDAMFSVIYILVMLVYSWFLTLVALSTVPIFVAITFFASPVVRRQL 608

Query: 319 EEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQN 378
            E +   ++  + L+E L+G++TVK    + + +++W+E  A       ++   + +  +
Sbjct: 609 REKAERNAETQSQLVEVLSGIQTVKAQNIELKARWQWQERYARYIAAGFRNINTSTAASS 668

Query: 379 TAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKS 438
              F  Q + + ++ VGVYL+ +  L++G LIA  ++SG    PL++L+ L   + +   
Sbjct: 669 LTNFFNQLSGLLVLWVGVYLVFDNQLSLGQLIAFRIISGYVTQPLLRLAQLWQNFQETAL 728

Query: 439 SMTIIEQVMSMP---DEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHP 495
           S+  +  ++  P   D+ ++GK  I  P+I GK+E   ++F +       + +++L I  
Sbjct: 729 SLERLADIVDTPQESDDDDQGK--IPMPMINGKVEFRNLSFRFGEQGPLQLSNVTLEIPA 786

Query: 496 GEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVL 555
           GE V I+G+ GSGK+TL +L+  LY P EG + ID  DIS++    +RR IG VPQDS+L
Sbjct: 787 GEYVGIVGQSGSGKSTLMKLLPRLYSPLEGEILIDGYDISKVELYSLRRQIGIVPQDSLL 846

Query: 556 FYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSV 615
           F G++ +NI+L +P +   E++ AA  AG   F    P G   +VGE G  LSGGQRQ +
Sbjct: 847 FQGTVEENISLTKPNATTDEIITAAKAAGAHDFIMTLPLGYNTRVGERGGALSGGQRQRI 906

Query: 616 SIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVI 675
           +IAR  L  P +L++DE TSA+D  +E  +   L Q    +T+  ITH+ S +   DR+I
Sbjct: 907 AIARTVLQNPQLLILDEATSALDYDTERQVSINLQQHFRGKTVFFITHRLSTVRHADRII 966

Query: 676 VMEKGCIIADGPKHEVLNDLR 696
           VM+KG ++  G  H+ L +LR
Sbjct: 967 VMDKGAMVEQG-SHDELMELR 986