Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., ATPase from Synechococcus elongatus PCC 7942

 Score =  211 bits (536), Expect = 1e-58
 Identities = 147/511 (28%), Positives = 253/511 (49%), Gaps = 20/511 (3%)

Query: 193 VLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKV--MGIRMEARPPSVGAF 250
           +LS  +L   +    F+ ++ Y++   G++    I   LF  V  + +R   R P     
Sbjct: 76  LLSLALLATIVVRLAFRGVQGYYVQEVGQRVTADIRQDLFQHVTALAVRFFDRTPVGKLV 135

Query: 251 ARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLI 310
            R   + E++ E F++  I  L D+   L   + ++ +   L  +  + +L         
Sbjct: 136 TRLTNDVEALGEVFSTGAIGILSDIVSLLAIAIAMFWLQWQLALLLTVLLLPTTAVILYF 195

Query: 311 QSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSR 370
           Q R ++A        S   A+L E++ G+  V+ F  +     ++   VA+        R
Sbjct: 196 QRRYRKANYRAREELSNLNASLQENMVGIGIVQSFRREAYNAQQFR--VANQRYLEAVDR 253

Query: 371 RI--TDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSL 428
            I    +I  T  ++  AA   ++ +G +L+    +  G L A  + S R   PL QL+ 
Sbjct: 254 TIFHDSAISATLEWISLAAIAAVLWLGSFLVLQDQMNFGLLAAFILYSQRLFDPLRQLA- 312

Query: 429 LSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQ------GKIELDRVTFHY-PNS 481
              ++   ++  T IE+++ + +E  E +       +       G+I  + V F Y P+ 
Sbjct: 313 --EKFTSIQAGFTAIERIVDIFNEPIEIRDAAQTQQLSLETSQSGEIHFENVWFGYKPDE 370

Query: 482 PIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHID 541
           P+  +++L++TI PG+KVA++G  G+GK+T+ RL+  LY+PT+G + ID  DI  L  ++
Sbjct: 371 PV--IQNLNITIQPGQKVALVGPTGAGKSTIIRLLCRLYEPTQGRILIDGIDIRNLPQVE 428

Query: 542 IRRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVG 601
           +RR++G + QD  LF G +  NITLG P  D   V  AA R  V    +  P G    + 
Sbjct: 429 LRRHLGVILQDGFLFAGDVSSNITLGEPY-DQEAVQAAARRTNVATLIESLPQGYATPLR 487

Query: 602 EGGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILI 661
           E G  LSGGQRQ ++ AR  +  P VL++DE T+ +D  +E  +++ L  L    T I+I
Sbjct: 488 ERGTNLSGGQRQLLAFARVAIRDPKVLILDEATANLDVGTEALVQEALDDLLSDRTAIII 547

Query: 662 THKTSMLDVVDRVIVMEKGCIIADGPKHEVL 692
            H+ S +   DR++V+ +G +I DG  H+VL
Sbjct: 548 AHRLSTIRNADRILVLRQGQLIEDG-SHDVL 577