Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., Type I secretion system ATPase, PrtD (NCBI) from Rhodospirillum rubrum S1H

 Score =  233 bits (594), Expect = 2e-65
 Identities = 144/557 (25%), Positives = 290/557 (52%), Gaps = 8/557 (1%)

Query: 149 KSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVF 208
           K++  +   +  S  INL    +P++   VYD+V+ + +  TL VL+   +   +   + 
Sbjct: 24  KARGGFVSTMAFSFFINLLLFVSPLYMLQVYDRVLTSRSNSTLVVLTLAAVGALIVLGLI 83

Query: 209 KMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSAT 268
           + +RS  +   G   D  +++++FS V   +   R P+ G + + L++ +++REF T + 
Sbjct: 84  EAVRSRILVRTGALIDTELNTRVFSSVF--QQAVRRPAAG-YTQALRDLDTLREFLTGSG 140

Query: 269 ISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQK 328
           +    D P+A LF+ L +++   L  V + G +++   + +     +  +++   ++   
Sbjct: 141 LIVFCDAPWAPLFIALGFVLHPLLGLVSLFGAIVVFALAIVNNLGTRGLLKDAGTVSMHA 200

Query: 329 YANLIESLAGLETVKLFGAQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAAN 388
              +  SL   E ++  G     Q RW E    +     K+     ++   +   +    
Sbjct: 201 NNYVSSSLRNAEVLEAMGMMSNIQRRWSERHDAVIGLQAKASDRASAVMAASKSFRMGLQ 260

Query: 389 IGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMS 448
           + ++  G YL  + +++ G +IAA+++ GRA+ P+    +   ++    ++    E++  
Sbjct: 261 VAILGTGAYLAIHSEISPGTMIAASIIMGRALQPV---EMAVGQWKGLVAARGAYERLTD 317

Query: 449 MPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSG 508
           +      GK  +  P  +G++ L +V    P S + ++R ++L I PGE + +IG   +G
Sbjct: 318 LLANNAAGKDTMTLPRPEGRVSLQQVVIVPPGSSVPALRGVTLDIAPGEVLGVIGPSAAG 377

Query: 509 KTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGR 568
           K+TL R ++G++ P +G VR+D  D+      +I  ++G +PQD  LF GS+ +NI    
Sbjct: 378 KSTLARALVGVWPPVQGIVRLDGNDLRHWKSEEIGPHLGYLPQDVELFDGSVAENIARFG 437

Query: 569 PLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEGGMLLSGGQRQSVSIARAFLGRPPVL 628
            +  D+ V+ AA +AGV    Q+ P G + ++G GG  LSGGQRQ +++ARA    P ++
Sbjct: 438 DIDPDK-VIAAARKAGVHDMVQKLPEGYDTKIGVGGQALSGGQRQRIALARAVYNDPVLV 496

Query: 629 LMDEPTSAMDNRSEMHIKQQLSQLKPS-ETLILITHKTSMLDVVDRVIVMEKGCIIADGP 687
           ++DEP +++D   E  +   +  ++ + +T+++ITHK ++L+ VD V+V++ G +   GP
Sbjct: 497 VLDEPNASLDADGEAALMVAIDGMRAAGQTVVVITHKPTLLNAVDTVLVLKGGLVEMKGP 556

Query: 688 KHEVLNDLRQGNVRAVQ 704
           + +VL+   +    A Q
Sbjct: 557 RADVLSKFARPRAVASQ 573