Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., lipid A export ATP-binding/permease protein MsbA from Phaeobacter inhibens DSM 17395

 Score =  208 bits (530), Expect = 5e-58
 Identities = 162/570 (28%), Positives = 278/570 (48%), Gaps = 37/570 (6%)

Query: 145 STIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLS---SGILVI 201
           S ++     YR ++  + L  +      +   +   +VV N       +L+   +  LVI
Sbjct: 24  SALWPFMRPYRVLMAMATLALVLTAGLSLTLPLAVRRVVDNFRISEAALLNQYFAAALVI 83

Query: 202 FLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIR 261
                V   LR   +   G++    I   +F +V+G+          AF   +   E + 
Sbjct: 84  AALLAVGTGLRYALVTRLGERVVADIRKAVFDRVIGMSP--------AFFEQIMTGEVLS 135

Query: 262 EFFTSATI-------SSLIDLPFALLF---LVLIWLMAGHLVWVPVIGVLILVIYSFLIQ 311
              T  T+       S  I L   L+F   LVL+ L +  L  + ++ V  +++   ++ 
Sbjct: 136 RITTDTTLIQSVLGSSVSIALRNMLIFIGGLVLMLLTSAKLTSLVLLIVPAVIVPILVLG 195

Query: 312 SRLKRAIEEGSRLASQKYANLIESLAGLETVKLF----GAQGQFQYRWEEAVAHMANWNI 367
            RL++   E     +    N  E+L  ++TV+ +     ++ +F    E A      +++
Sbjct: 196 RRLRKISRENQDWIAASSGNAGEALGAVQTVQAYTHEVASRSEFSRLTETA------FDV 249

Query: 368 KSRRITDSIQNTAG--FVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQ 425
             RRI      T    F+  +  +G++ +G   +  G ++ G L+   + +    G +  
Sbjct: 250 SMRRIQTRAFLTVIVIFLVFSGVVGVLWMGANDVRAGIMSEGTLVQFVIYAVLVAGSVAA 309

Query: 426 LSLLSTRYNQAKSSMTIIEQVMSMPDEQEE--GKRYIHRPIIQGKIELDRVTFHYPNSP- 482
           LS + +   +A  +   + ++++  D+ ++    R +  P+ +G+I  D V+F YP  P 
Sbjct: 310 LSEIWSELQRAAGATERLVELLTAVDQVQDPYAPRALAAPV-RGEIRFDDVSFRYPARPQ 368

Query: 483 IASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDI 542
           I ++ D+SLT+ PGE VA +G  G+GKTT+ ++I   Y PT G V +D   +  L   D 
Sbjct: 369 IPALVDVSLTVQPGETVAFVGPSGAGKTTIIQMIQRFYDPTSGAVCLDGRPLRDLQRDDF 428

Query: 543 RRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGE 602
           R++I  VPQD V+F  S RDNI  GRP + D EV  AA  A    F    P G + QVGE
Sbjct: 429 RQHIALVPQDPVIFALSARDNIRFGRPGASDAEVEAAARAAAAHDFISALPEGYDSQVGE 488

Query: 603 GGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILIT 662
            G++LSGGQ+Q ++IARA L   PVLL+DE TSA+D  SE  ++  + +L    T +++ 
Sbjct: 489 RGVMLSGGQKQRIAIARAILRDAPVLLLDEATSALDAESERLVQAAVDELSQGRTTLIVA 548

Query: 663 HKTSMLDVVDRVIVMEKGCIIADGPKHEVL 692
           H+ + +   DR++VME+G IIA G   +++
Sbjct: 549 HRLATVKKADRIVVMEEGRIIATGTHDQLV 578