Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  210 bits (534), Expect = 2e-58
 Identities = 158/556 (28%), Positives = 267/556 (48%), Gaps = 54/556 (9%)

Query: 157 VLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFI 216
           +L+A L++ +  V   + + ++Y  ++ N      W+    +L         + +  Y  
Sbjct: 84  LLMAVLVLVVIPVLVLLHALVIYQGLLGNYPMSIRWLAHRYLLK--------QSIAFYQN 135

Query: 217 DVAGKKSDILISSKLFSKVMGIRMEARPPSVGAFARHLQEFESIREFFTSATISSLIDLP 276
           D AG+     I++K+    + +R            + L     I  +F S  +  + D  
Sbjct: 136 DFAGR-----IATKVMQTSLAVRETV--------TKLLDVLVYILVYFLSMLVI-IADAD 181

Query: 277 FALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANLIESL 336
             L+  +L+WLM             I V   F    +LK+   E +   S     +++S 
Sbjct: 182 LRLMLPMLVWLM-------------IYVGLQFYYLPKLKQVSTEQADARSTMTGRIVDSY 228

Query: 337 AGLETVKLFG-AQGQFQYRWEEAVAHMANWNIKSRRITDSIQNTAGFVQQAANIGMIIVG 395
             + TVKLF   Q + QY  +E++    +   +  R+   I  +   +       +  V 
Sbjct: 229 TNIATVKLFSHTQKEAQYA-KESMTGFLDTVYRQMRLVTGINVSVQVINYLLAFSVAAVS 287

Query: 396 VYLISNGDLTMGGLIAATMLSGRAIGP----LVQLSLLSTRYNQAKSSMTIIEQVMSMPD 451
           ++L  +  +T+G +  A  LS R  G     + ++S L          M  + +  S+ D
Sbjct: 288 IWLWRDNAITIGAIAVAVSLSLRLNGMSQWIMWEISSLFENIGTVADGMNTLSRPTSVQD 347

Query: 452 EQEEGKRYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTT 511
                +  + +    G+I  +RV+FHY  +    + DL L I PGEKV ++GR G+GK+T
Sbjct: 348 SDNASQLTVSK----GEIAFNRVSFHYGEAS-GVIEDLDLKIKPGEKVGLVGRSGAGKST 402

Query: 512 LERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNITLGRPLS 571
           L  L+M  +   +G + ID  +I ++    +R NIG V QD+ L + SIRDNI  G+P +
Sbjct: 403 LVNLLMRFHDVEQGSITIDGQNIREVEQDSLRANIGMVTQDTSLLHRSIRDNIRYGKPDA 462

Query: 572 DDREVMDAANRAGVTVFTQ--QDPAG---LERQVGEGGMLLSGGQRQSVSIARAFLGRPP 626
            + E+ +A  +A    F Q   DP G   L+ QVGE G+ LSGGQRQ ++IAR  L   P
Sbjct: 463 SEEELENAIRQAQAYEFIQGLSDPEGNHGLDAQVGERGVKLSGGQRQRIAIARVLLKNAP 522

Query: 627 VLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVMEKGCIIADG 686
           +LL+DE TSA+D+  E  I++ L QL   +T+I I H+ S +  +DR+IV+++G I+  G
Sbjct: 523 ILLLDEATSALDSEIEAAIQESLYQLMEGKTVIAIAHRLSTIAAMDRLIVLDQGKIVEQG 582

Query: 687 PKHEVLNDLRQGNVRA 702
              E+   ++QG + A
Sbjct: 583 THQEL---IKQGGIYA 595