Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 552 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  191 bits (486), Expect = 6e-53
 Identities = 136/533 (25%), Positives = 264/533 (49%), Gaps = 20/533 (3%)

Query: 154 YRDVLIASLLINLFAVAAPMFSRIVYDKVVPNLAFETLWVLSSGILVIFLFDFVFKMLRS 213
           + ++L+ S+ INL ++A P     +YD+++PN A  T  VL  G+ +  L + + +  RS
Sbjct: 14  FNELLLTSVFINLLSLALPFTMLQIYDRILPNEAHGTATVLVIGVAIAILLELILRYARS 73

Query: 214 YFIDVAGKKSDILISSKLFSKVMGIRME-ARPPSVGAFARHLQEFESIREFFTSATISSL 272
           + +  +    ++   +++  +++            G  +  +    ++R+ ++     +L
Sbjct: 74  WLLGASAANYELHTITRVVKRLLNADYHHIENLGAGKISHGIHSIAAMRDIYSGQAAVAL 133

Query: 273 IDLPFALLFLVLIWLMAGHLVWVPVIGVLILVIYSFLIQSRLKRAIEEGSRLASQKYANL 332
           +D PF L+FL L+  + G LV++P+I  LI  +  + +  +L  A +E S    ++   L
Sbjct: 134 MDFPFVLIFLALVAYIGGPLVFIPLIVWLIAGVRVWQLGQKLSLATKELSLSQDERTRLL 193

Query: 333 IESLAGLETVKLFGAQGQFQYRWE----EAVAHMANWNIKSRRITDSIQNTAGFVQQAAN 388
           +  L+GL T K    + +  Y ++    + +A     +  S ++ + IQ TA    QA  
Sbjct: 194 MLVLSGLTTTKAMALESRMTYAYKKINHQRLAQQEEVDWLSAKLQELIQGTA----QATT 249

Query: 389 IGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGPLVQLSLLSTRYNQAKSSMTIIEQVMS 448
           + ++++G + + NG+LT GGL A ++L+GRA+ PL  +  L  +Y  AK +M  +  +++
Sbjct: 250 LCLVMIGCFEVLNGNLTTGGLAACSILAGRAVAPLSAIGSLRAKYVSAKEAMDQVNALIA 309

Query: 449 MPDEQEEGK-RYIHRPIIQGKIELDRVTFHYPNSPIASVR--DLSLTIHPGEKVAIIGRI 505
            P E   G+ RY      Q K+ L  ++F   ++   S R  ++SLTI  G  V +    
Sbjct: 310 TPQETFNGQTRY------QQKLPLGPISFESVSAEKTSARLDNISLTIPAGCIVTVTSNP 363

Query: 506 GSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDIRRNIGCVPQDSVLFYGSIRDNIT 565
            +  + L   I   ++   G + I           + R++I  VP  + LF GSI +N+T
Sbjct: 364 MTHASLLLSTIGAYHQLDSGQIAIAGVPQQDHDGFEYRQSICYVPPWASLFSGSILENMT 423

Query: 566 LGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGEG-GMLLSGGQRQSVSIARAFLGR 624
           L R    +   M  A++ G++    Q PAG + QVG     +L+ G  + +++ RA    
Sbjct: 424 LFR-REREASAMLIADQLGLSATLAQLPAGYQTQVGSNENQVLNKGAIKLIALVRALAQS 482

Query: 625 PPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILITHKTSMLDVVDRVIVM 677
           P +LL+DEP  ++D  S+  + Q L + +   T+++ ++   +  + D  I +
Sbjct: 483 PSILLLDEPMVSLDADSQARLLQVLMERRGQMTVVIASYFDEVAALSDMQIAL 535