Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  648 bits (1671), Expect = 0.0
 Identities = 330/696 (47%), Positives = 480/696 (68%), Gaps = 1/696 (0%)

Query: 3   DTLLNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQI 62
           D LL+SLV ++ Y+G   S E+L  GLPL+   LTP L P++A RAGL AK  R  LDQI
Sbjct: 23  DPLLDSLVLLTEYFGSPCSSESLAAGLPLSGSILTPELVPQAAGRAGLAAKLTRKGLDQI 82

Query: 63  PHLVFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVK 122
             ++ P +LLLK   AC+L  I+ +   A I   E+G      S+  LEAMY+G  F+VK
Sbjct: 83  SPILLPCILLLKDKNACLLREIDIDKDRAVIQLPETG-GEEELSIEALEAMYVGYLFLVK 141

Query: 123 KQFRFDERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKV 182
           +Q+R D      L     HW   T+  S  IYRD LIAS+L+NLFA+ +P+F   VYDKV
Sbjct: 142 QQYRGDMGLDLHLHDSRTHWLIQTLKDSAPIYRDALIASVLVNLFALVSPLFIMNVYDKV 201

Query: 183 VPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEA 242
           VPNLAFE+LWVL+ G  + ++FD + + LR+Y IDVAGKK DI++SS+LF+K +GI +E 
Sbjct: 202 VPNLAFESLWVLAIGAGIAYIFDLIMRQLRAYLIDVAGKKVDIIVSSRLFAKAIGIPLEK 261

Query: 243 RPPSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLI 302
           R PS+G  AR L EF+SIRE  TSATI++L+DLPFAL F+++I+++AG L  +PVIG  I
Sbjct: 262 RSPSIGGMARQLGEFDSIREILTSATITTLVDLPFALFFMLIIYIVAGDLAIIPVIGGCI 321

Query: 303 LVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHM 362
           ++ Y+ L+Q RLK AIEE ++ +S K+ +LIESLA +E++K  GA+G  Q  W++ + H 
Sbjct: 322 IIGYTLLMQPRLKAAIEESNKFSSLKHGHLIESLASIESIKSSGAEGLVQKSWQQMIGHT 381

Query: 363 ANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGP 422
           ANW +K ++I+ S+ N A F  Q + + ++I+GVY +++ D++MGG+IAA +LS RAI P
Sbjct: 382 ANWQLKVKKISTSVTNVANFTVQLSVVCVVILGVYRVADNDISMGGIIAAVILSSRAISP 441

Query: 423 LVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSP 482
           + QL+ L TR N   S++  ++Q+M+  DE E     + +  ++G+I  D V+F+YP S 
Sbjct: 442 MAQLAGLMTRGNHTASALRQLDQIMTQEDEFENKGHLVSKHRLKGQINADHVSFNYPGSE 501

Query: 483 IASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDI 542
              +  +SL+I PGE++AIIGR GSGK+TL +L++GLY+PT+G +R D  D +Q+H  D+
Sbjct: 502 RPVLHPMSLSIAPGERIAIIGRNGSGKSTLAKLLVGLYQPTKGSLRYDGLDSAQIHPTDL 561

Query: 543 RRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGE 602
           RRN G +PQD  LF+G+IRDNI  G     + +++ A   +GV  FT  +  GL++QVGE
Sbjct: 562 RRNFGYLPQDITLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVNQFTDIETEGLDQQVGE 621

Query: 603 GGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILIT 662
           GG  LS GQRQ++++ARA L  PPVLLMDEPT+++D R+E    + +  +    TL+LIT
Sbjct: 622 GGQSLSRGQRQTIALARATLNDPPVLLMDEPTASLDARAEKQFIRAMRNVSKERTLLLIT 681

Query: 663 HKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQG 698
           HK  +L++VDR++V+++G ++ADGPK +VLN L +G
Sbjct: 682 HKMHLLNLVDRILVLDRGHLVADGPKEQVLNQLAKG 717