Pairwise Alignments

Query, 704 a.a., type I secretion system permease/ATPase from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., toxin secretion ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  643 bits (1659), Expect = 0.0
 Identities = 327/698 (46%), Positives = 478/698 (68%), Gaps = 1/698 (0%)

Query: 3   DTLLNSLVYVSRYYGLANSPEALINGLPLADGKLTPFLFPRSAERAGLIAKENRAPLDQI 62
           D LL+ LV ++ ++G   S ++L  GLPL+   LTP L P++A RAGL AK +R  L++I
Sbjct: 23  DPLLDCLVLLTEHFGNPCSSDSLAAGLPLSGAVLTPDLLPQAASRAGLAAKLSRKGLNEI 82

Query: 63  PHLVFPVVLLLKGGEACVLNSINQETQEAEIVTAESGLVPVAYSLSDLEAMYIGRYFMVK 122
             ++ P +LLLK  +AC+L   + E+  A I   E+G   +  ++  LE +Y+G  F+VK
Sbjct: 83  SPILLPCILLLKDKKACILREFDLESDRAVIQLPETGGEEIL-TIESLETLYVGYLFLVK 141

Query: 123 KQFRFDERSPEVLKPRDGHWFWSTIYKSKHIYRDVLIASLLINLFAVAAPMFSRIVYDKV 182
           +++R D      L     HW   T+  S  IYRD LIAS+L+N+FA+ +P+F   VYDKV
Sbjct: 142 QEYRGDMGFDVYLHDNKTHWLVQTLKDSAPIYRDALIASVLVNIFALVSPLFIMNVYDKV 201

Query: 183 VPNLAFETLWVLSSGILVIFLFDFVFKMLRSYFIDVAGKKSDILISSKLFSKVMGIRMEA 242
           VPNLAF++LWVL+ G  + +LFD V + LRSY IDVAGKK DI++SS+LF+K +GI +E 
Sbjct: 202 VPNLAFDSLWVLAIGASIAYLFDLVMRQLRSYLIDVAGKKVDIIVSSRLFAKAIGIPLEK 261

Query: 243 RPPSVGAFARHLQEFESIREFFTSATISSLIDLPFALLFLVLIWLMAGHLVWVPVIGVLI 302
           R PS+G  A+ L EF+SIRE  TSATI++L+DLPFAL FL++I+++AG L  +PV+G +I
Sbjct: 262 RSPSIGGMAKQLGEFDSIREILTSATITTLVDLPFALFFLIVIYIVAGDLAVIPVVGGMI 321

Query: 303 LVIYSFLIQSRLKRAIEEGSRLASQKYANLIESLAGLETVKLFGAQGQFQYRWEEAVAHM 362
           ++ ++   Q +LK AIEEG++ +S K+ +LIESL+ LE++K  GA+G  Q  W++ + H 
Sbjct: 322 IIGFTLYTQPKLKAAIEEGNKFSSLKHGHLIESLSALESIKANGAEGIVQKSWQQMIGHS 381

Query: 363 ANWNIKSRRITDSIQNTAGFVQQAANIGMIIVGVYLISNGDLTMGGLIAATMLSGRAIGP 422
           ANW +KS+++++S+ NTA F+ Q   + ++I+GVY +S+  ++MGG+IAA MLS RAI P
Sbjct: 382 ANWQLKSKKLSNSVSNTANFIVQFTVVCVVILGVYRVSDNLISMGGIIAAVMLSSRAIAP 441

Query: 423 LVQLSLLSTRYNQAKSSMTIIEQVMSMPDEQEEGKRYIHRPIIQGKIELDRVTFHYPNSP 482
           + QL+ L TR N   S++  + ++M   DE E     + +  + GKI  D V F YP S 
Sbjct: 442 MAQLAGLMTRANHTASALRQLNELMLQEDEFENKGHLVSKQRLIGKINADHVGFSYPGSE 501

Query: 483 IASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIMGLYKPTEGHVRIDDTDISQLHHIDI 542
              +  LSLTI+PGE++AIIGR GSGK+TL +L++GL++PT G +R D  D +Q+H  D+
Sbjct: 502 KPVLHPLSLTINPGERIAIIGRNGSGKSTLAKLLVGLFQPTTGSLRYDGVDSAQIHPSDL 561

Query: 543 RRNIGCVPQDSVLFYGSIRDNITLGRPLSDDREVMDAANRAGVTVFTQQDPAGLERQVGE 602
           RRN G +PQD  LF+G+IRDNI  G     + +++ A   +GV+ FT  +  GL++QVGE
Sbjct: 562 RRNFGYLPQDVTLFHGTIRDNILFGTRQVTEHQLIRAVQLSGVSQFTHLEAEGLDQQVGE 621

Query: 603 GGMLLSGGQRQSVSIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKPSETLILIT 662
           GGM LS GQRQ+V++ARA L  PPVLLMDEPT+++D R+E    + +  +    TL+LIT
Sbjct: 622 GGMSLSRGQRQTVALARATLNDPPVLLMDEPTASLDARAEQQFIRSMQNVSKDRTLLLIT 681

Query: 663 HKTSMLDVVDRVIVMEKGCIIADGPKHEVLNDLRQGNV 700
           HK  +L +VDR+IV+E+G ++ADGPK EVL  L  G V
Sbjct: 682 HKMHLLQLVDRIIVLERGHVVADGPKAEVLEKLNFGLV 719