Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., Membrane bound c-di-GMP receptor LapD from Pseudomonas fluorescens FW300-N2E2

 Score =  217 bits (552), Expect = 2e-60
 Identities = 161/650 (24%), Positives = 314/650 (48%), Gaps = 25/650 (3%)

Query: 1   MTLYKQLVAGMIAVFILLLISVFTIEFNTTRNSLEQQQRSEVNNTINTVGLALAPYLEKK 60
           M+L+KQL+  +    ++     F +   ++R     Q RS   +    + L+L P ++  
Sbjct: 1   MSLFKQLLIAICLFLVVAFSGSFMVSLESSRAQYVNQLRSHAQDAATALALSLTPNID-- 58

Query: 61  DTIAVESVINALFDGSSYSIVRLIFL-DDGTEILRSYPIQPNNVPAWFTQLNLFEPIHDR 119
           D   VE +++++FD   Y+ +R++ +  D T + R+      +VP WF +L   EP    
Sbjct: 59  DPAMVELMVSSIFDSGYYASIRVVDVATDRTLVERTGTPDAGSVPQWFVKLIGLEPAGGD 118

Query: 120 RVVTSGWMQLAEVEIVSHPGAAYAQLWKALIRLSIAFLAILVIGMFAVAFILKRSLRPLQ 179
            +V+ GW Q A VE+VSHP  A A+LW++ +      L    +     A +L+R L+PL 
Sbjct: 119 AIVSRGWEQAARVEVVSHPMFALAKLWQSALGSLGWLLLCGAVSAVLGALLLRRQLKPLD 178

Query: 180 LIVNKMEQVANNQFGEPLPRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYL 239
            +V++   +A  +F      P T +L  VV  +N+M E+++  F+ QA+ +++LR  +Y 
Sbjct: 179 YMVHQSHAIARREFLSLPELPRTPELRRVVQAMNQMVEKLKALFQEQAERSEKLRVESYQ 238

Query: 240 DPVSHLGNRAYYMSQLSGWLS---ESGIGGVAILQAEFIKELYEEKGYEAGDGMVRELAD 296
           D ++ L NR Y+  QL+  +S   ++  G + +L+ + +  L +  G +  D +++ + +
Sbjct: 239 DNLTGLANRRYFEMQLNARVSNPEQASSGYLLLLRVKDLAGLNQRLGGQRTDQLLQAVGE 298

Query: 297 RLKNSITIKDIS---IARISTYEFGIIMPNMDETELKIVAESIITCVDDINPDPTGMAKA 353
           +L         +   + RI   EF ++ P +   E   +A+++   +  ++        +
Sbjct: 299 QLLRECARYPETHNLVTRIRGGEFAVLAPGLVREEALQLAQNLEAALASLHATGATDVAS 358

Query: 354 NLSLGVVSNKRQSSTTTLLSLLDNALAKAKSNPE-----LNYGFISSDTDKIILGKQQWK 408
             S+G+       S   +L L D ALA+A+S  E     L++  ++S  D        W 
Sbjct: 359 VASIGLAPFVHGDSPQAVLQLGDQALAQAESQGEPGWACLDHSAVASVGD----DHHAWH 414

Query: 409 TLVEEAIHNDWFTFRYQ---AANSSWGKTFHREVFSAFEKDGVRYTANQFLFALEQLNAS 465
           TL+++A+++  F   +Q   AA  +     ++ +    ++ G    A +FL  LE+   +
Sbjct: 415 TLLDQALNHQRFELYFQPVVAARDTQVVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWT 474

Query: 466 HIFDQYVIERVIQQLEKGELTDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEI 525
              D+ ++E+V++Q+   E    LA+N++  +++ P  +  I + L  H ++ + L  EI
Sbjct: 475 ARLDRLMLEQVLRQMAGHE--QSLALNLSSATLADPQALNKIFEILRAHSNLGSRLTLEI 532

Query: 526 PEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLD 585
            E     +     L    +R  G    +  +G  F  +  ++     Y+K+D  +   +D
Sbjct: 533 GEEQLPEQAVLEQL-TRRLRELGFSLSLQRFGGRFSMIGNLSRLGLAYLKIDGSYIRAID 591

Query: 586 DERQK-FTLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIV 634
            E  K   + +I R AH++ +  IA RVET+ +L  + E  +   QG +V
Sbjct: 592 QESDKRLFIEAIQRAAHSIDLPLIAERVETEGELAVIREMGLFGVQGQLV 641