Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., regulatory protein CsrD (RefSeq) from Shewanella amazonensis SB2B

 Score =  104 bits (259), Expect = 1e-26
 Identities = 112/492 (22%), Positives = 206/492 (41%), Gaps = 31/492 (6%)

Query: 151 RLSIAFLAILVIGMFAVAFILK-------RSLRPLQLIVNKMEQVANNQFGEPLPRPNTR 203
           RL    L IL++G+ AVA  ++         L  ++ +  + + + + +  E    P   
Sbjct: 129 RLGWRELMILLVGIVAVAGFVRFGFLWFSAELEGIEALAQRSKLILDGKLDEAAKTPGNG 188

Query: 204 DLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSESG 263
               +   ++++  ++  A K +A+  + +R   +LDP + +GNR +  ++L+   S+ G
Sbjct: 189 KPRLINRALSRLLAELADAHKERARFDKFIRSNTFLDPQTRIGNRLFLQNRLNALSSDQG 248

Query: 264 I---GGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSITI-----KDISIARISTY 315
           +   G + +L+ E +  L +E    AGD +V EL     N+I +      +   AR S  
Sbjct: 249 MLAPGVLYLLEMEDLDILQQE----AGDEVVLELLHSTINAINLVLQTQANSIFARRSHN 304

Query: 316 EFGIIMPNMDETELKIVAESIIT-CVDDINPDPTGMAKANLSLGVVSNKRQSSTTTLLSL 374
           +  I++P +   E   +A+ ++  C+    P     A     LG    K       LL  
Sbjct: 305 QLAIVVPQISLVEADALADKLLKICLAQPLPK-IEEADNFFHLGGAYFKEGDMPEPLLDE 363

Query: 375 LDNALAKAKSNPELNYGFISSDT--DKIILGKQQWKTLVEEAIHNDWFTFRYQAANSSWG 432
            D AL  A+      +          +   G  +W++ +E A+ N  F    Q      G
Sbjct: 364 ADMALRAAQLQGASGWFMYDKGAVDQEFAKGSVRWRSFLENALVNRNFVTFAQPVCEGDG 423

Query: 433 KTFHREVFSAFEKD-GVRYTANQFLFALEQLNASHIFDQYVIERVIQQL--EKGELTDPL 489
              H E+F+      G    A  F+    +       ++ V+ER + +L  + G      
Sbjct: 424 SHHHHEIFTRVRDPMGSLVRATLFIPMAVKCGLMPQIERQVVERTLFELMSDTGTAKRHY 483

Query: 490 AINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGA 549
           +IN++  S++  +F+RW+  TL ++  +A+ L FE+ E   +          N +R  G+
Sbjct: 484 SINLSVDSLTSRAFVRWLQTTLLEYRHLASRLVFEVTEDMVMKHRSQLEPKLNMLRKMGS 543

Query: 550 DFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLD--DERQKFT---LTSISRTAHNLG 604
              VD+ G+   S  YI E    ++KL       +D   E Q F    + S+ RT   + 
Sbjct: 544 RICVDHVGQQVVSTQYIRELGFNFIKLHRSVVRQIDLRPENQLFVRSLIGSLYRTDVQVF 603

Query: 605 ITTIASRVETQT 616
              + S  E QT
Sbjct: 604 AEGVGSFEEWQT 615