Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score = 99.0 bits (245), Expect = 8e-25
 Identities = 100/420 (23%), Positives = 176/420 (41%), Gaps = 21/420 (5%)

Query: 232 QLRERAYLDPVSHLGNRAYYMSQLSGWLSESGIGGVAILQAEFIKELYEEKGYEAGDGMV 291
           QLR RA  D V+ L NR  +  +L  +  ++    +     E  K + +  G+ AGD M+
Sbjct: 424 QLRRRANFDNVTGLLNRCAFEERLQAFAEDAQTLAICYFDLEQFKLINDSCGHNAGDAML 483

Query: 292 RELADRLKNSITIKDISIARISTYEFGIIMPNMDETELKIVAESIITCVDDINPDPTGMA 351
           + +A  ++ S+  + + +AR+   EFG+ + ++    L    + II  V     +  G  
Sbjct: 484 KMVAKAIQASLEGQGL-LARLGGDEFGLALKDLGVVPLAQQVKQIINAVGKQVMEHHGCH 542

Query: 352 -KANLSLGVVSNKRQSSTTTLLSLLDNA-----LAKAKSNPELNYGFISSDTDKIILGKQ 405
               +S GV   +  +     L LL +A      AK K + ++++     D DK +  ++
Sbjct: 543 YHVGISAGVALAR--APYINALELLKDADIACIAAKRKGSNQVHF---YDDKDKELTYQR 597

Query: 406 ---QWKTLVEEAIHNDWFTFRYQA--ANSSWGKTFHREVFSAFEKDGVRYTANQFLFALE 460
              +W   + +AI ++     YQ   A    GK     +    E  G      QF+ A E
Sbjct: 598 NAPKWAVRIAQAIEHNELLLYYQPIKALGPQGKQRMEVLLRIQEPCGRILAPAQFIAAAE 657

Query: 461 QLNASHIFDQYVIERVIQQLEKGE---LTDPLAINIAQGSISQPSFIRWISQTLSKHLSV 517
           +       D+ VI +    L   E       L+IN++  S+     + +I   L +    
Sbjct: 658 RFKLMTDVDKEVIRKTFLWLSLHEELWADHCLSINLSANSLGAEGMVDYIIAQLERFAIP 717

Query: 518 ANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLD 577
           +  + FEI E   +   +      N ++  G  F +D++G  F S  Y+ E    YVK+D
Sbjct: 718 SQCICFEITETSAIQNRNRAMEMLNQLKKQGFSFALDDFGTGFASYGYLRELPVNYVKID 777

Query: 578 YLFTHHLDDERQKFTLT-SISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIVDK 636
             F   L    + + +  SI      +GI T+A  VE Q  ++ L    I   QG+ + +
Sbjct: 778 GCFIKSLASNAKDYAIVKSIHDVCRVMGIETVAEFVENQEIIERLKSIGINYAQGYAIGR 837