Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  100 bits (250), Expect = 2e-25
 Identities = 103/429 (24%), Positives = 187/429 (43%), Gaps = 22/429 (5%)

Query: 226 QAKEAQQLR-ERAYLDPVSHLGNRAYYMSQLSGWLSESGIG----GVAILQAEFIKELYE 280
           + KEA+ +  ++A  DP++ L NR   +  L+  +           +  L  +F KE+ +
Sbjct: 569 EKKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVND 628

Query: 281 EKGYEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNMDETE-LKIVAESIITC 339
             G++ GD +++E A RLK  I   D+ +AR+   EF +++  +D    ++ VA+SI+  
Sbjct: 629 TLGHDMGDLLLQETAKRLKGCIRESDV-VARLGGDEFTVVLSGIDSPSGVERVAQSILER 687

Query: 340 VDDINP--DPTGMAKANLSLGVVSNKRQSSTTTLLSLLDNALAKAKSNPELNYGFISSDT 397
           + +     D T    A++ + +  +   +S   LL   D A+  AK      + + +   
Sbjct: 688 IAEPYSLGDETAYISASIGITIYPDDA-TSIEGLLKHADQAMYAAKEQGRNRFHYFTPSM 746

Query: 398 DKIILGKQQWKTLVEEAIHNDWFTFRYQAA--NSSWGKTFHREVFSAFEKDGVRYTANQF 455
            +    +      +  AI+   F   YQ     +  G      +           +  +F
Sbjct: 747 QEYARYRMALIKDLRNAINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEF 806

Query: 456 LFALEQLNASHIFDQYVIERVIQQLEKGELTDPLAINIA------QGSISQPSFIRWISQ 509
           +   E+    +    +V E+  QQ  +      + I I+      Q      +F  W++ 
Sbjct: 807 IPVAEETGLINEIGNWVFEKAAQQSARWRTQHGVEIQISINKSPIQFRDEGDTFSDWLA- 865

Query: 510 TLSKHLSVA-NLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINE 568
            L +HL ++ N +  EI EG  ++          A R+AG    +D++G  + SL Y+ +
Sbjct: 866 -LLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKK 924

Query: 569 FRPKYVKLDYLFTHHLDDERQKFTL-TSISRTAHNLGITTIASRVETQTQLDFLSEHFIE 627
           F   Y+K+D  FT +L+ +     L  +I   AH LGI  IA  VETQ Q D L+    +
Sbjct: 925 FDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCD 984

Query: 628 VFQGFIVDK 636
             QG++  K
Sbjct: 985 FAQGYLYSK 993