Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 837 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score = 99.0 bits (245), Expect = 8e-25
 Identities = 91/426 (21%), Positives = 179/426 (42%), Gaps = 15/426 (3%)

Query: 225 AQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSESGIG----GVAILQAEFIKELYE 280
           AQ +  ++L    Y DP++ L NR    + L   L  +        +  +  +  K + +
Sbjct: 401 AQKQSEKELARLVYHDPLTKLPNRMMLSANLEQELRHAAREETELALIFIDVDLFKHIND 460

Query: 281 EKGYEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNMDETE-LKIVAESIITC 339
             G+  GD ++ E+A RL   +  ++ ++AR+ + EF  ++P+++  + + ++   +   
Sbjct: 461 SYGHVTGDAILVEVARRLGQKLG-EEATLARLGSDEFIAVLPHVESDDSVSLMVSRLREA 519

Query: 340 VD-DINPDPTGMAKANLSLGVVSNKRQS-STTTLLSLLDNALAKAKSNPELNYGFISSDT 397
            D     D  G  +   S+GV        S  TLL   D A+ +AK+N   NY F +   
Sbjct: 520 FDAPFLLDDEGSVRLTASMGVAIYPGDGESGDTLLRNADTAMHRAKANGRNNYAFYTQSL 579

Query: 398 DKIILGKQQWKTLVEEAIHNDWFTFRYQAANS-SWGKTFHREVFSAFEKDGVRYTANQ-F 455
               +   + ++ + +AI+ D F   YQ   +   G+    E    +E   +   +   F
Sbjct: 580 TLASVEHLKLQSALHDAINKDAFYLVYQPKLALGTGQCVGFEALLRWEDPQLGTISPAIF 639

Query: 456 LFALEQLNASHIFDQYVIERVIQQ----LEKGELTDPLAINIAQGSISQPSFIRWISQTL 511
           +   E +   +    +V+++   Q    L +G+    +++N+A   + Q  F   + + L
Sbjct: 640 IPVAENIGLINEIGLWVLKQAATQGAQWLAEGKRFGRISVNVAGPQLQQKQFCAQVKRVL 699

Query: 512 SKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRP 571
            +       L  E+ E C +++P         +   G +  VD++G  + SL+Y+     
Sbjct: 700 DEAGLPPEYLELEVTESCMMSDPLAVIEVLKQLGELGVELSVDDFGTGYSSLNYLKRLPI 759

Query: 572 KYVKLDYLFTHHLD-DERQKFTLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQ 630
             +K+D  F   +  D        ++    H L +  IA  VET  Q  FL     +  Q
Sbjct: 760 HKLKIDQSFIRDIPRDGNNTAIAKAVIALGHALNLCIIAEGVETPEQAAFLEAAGCDQAQ 819

Query: 631 GFIVDK 636
           G++  K
Sbjct: 820 GYLYSK 825