Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1094 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score = 90.1 bits (222), Expect = 5e-22
 Identities = 97/432 (22%), Positives = 202/432 (46%), Gaps = 32/432 (7%)

Query: 228  KEAQQLRERAYLDPVSHLGNRAYYMSQLSGWL--SESGIGGVAIL-----QAEFIKELYE 280
            K  Q +  ++  D +++L NR  Y S+LS  L  +E     VA+L     + ++I ++Y 
Sbjct: 649  KYEQDIWYKSNYDALTNLPNRQLYTSRLSQMLQLAEQRCCSVAVLFIDLDRFKYINDIY- 707

Query: 281  EKGYEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNMD-ETELKIVAESIITC 339
              G+  GD +++  A RL+  +   D  +AR+S  EF ++M +   + E++  A++I+  
Sbjct: 708  --GHAVGDELLQVAAARLEALLEQHDF-VARLSGDEFVVVMGHTKHQGEIEQRAQNILQH 764

Query: 340  VDDINPDPTGMAKANL----SLGVVSNKRQSSTTTLLSL-LDNALAKAKSNPELNYGFIS 394
            +      P G+ +  L    S+G+       ++  +L+   + A+ +AK +    +G+ S
Sbjct: 765  LSS----PFGINRNELLISASVGISCYPSNGTSVEVLTRNAETAMYQAKQDGRNCFGYFS 820

Query: 395  SDTDKIILGKQQWKTLVEEAIHNDWFTFRYQA-ANSSWGKTFHREVFSAFE--KDGVRYT 451
             D +  +L +   +  +  A+    F   YQ   ++S G+    E    +   + G+   
Sbjct: 821  PDMNNNMLARITLEQSLRSAVLQHEFCLHYQPIVDTSSGEGVALEALLRWRHPQRGL-VP 879

Query: 452  ANQFLFALEQLNASHIFDQYVIERVIQQLEKGE---LTDPLAINIAQGSISQ--PS-FIR 505
             ++F+   E+        ++VI++ ++ L +     +   +AIN++   ++   PS F  
Sbjct: 880  PDEFIPIAEETGLIEPIGEWVIQQALRDLRQCHSQGIMINMAINVSGRQLAHGDPSHFAC 939

Query: 506  WISQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDY 565
             ++  L K+      +H EI E   + +   +     A+R+ G +  +D++G  + SL Y
Sbjct: 940  MLNGLLQKYDVAPQYVHIEITESILMADTELSLKALTAIRHLGVEIYLDDFGTGYSSLSY 999

Query: 566  INEFRPKYVKLDYLFTHH-LDDERQKFTLTSISRTAHNLGITTIASRVETQTQLDFLSEH 624
            + +F    +K+D  F  + L+D      + +I     +L +  +A  VE++ Q  FL   
Sbjct: 1000 LKQFPISVIKIDKSFVDNMLEDRADANLIKAIITMGQSLDMRLVAEGVESEPQRSFLQGL 1059

Query: 625  FIEVFQGFIVDK 636
              +  QG++V K
Sbjct: 1060 GCDFVQGYLVAK 1071