Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., MSHA biogenesis protein MshH (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.4 bits (246), Expect = 4e-25
 Identities = 94/459 (20%), Positives = 191/459 (41%), Gaps = 24/459 (5%)

Query: 142 YAQLWKALIRLSIAFLAILVIGMFAVAFILKRSLRPLQLIVNKMEQVANNQFGEPLPRPN 201
           Y+  W  L+ L +  LA++ +  F   + L + L  ++ +  +   +   +  + L  P 
Sbjct: 123 YSISWYELLILGVGLLAVIALVRFGHIW-LSQQLDGIEELAQRSRLILQGKHEQALATPG 181

Query: 202 TRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSE 261
                 +   + K+ E+++ A K + +  + +R   +LD  + +GNR +  ++L     +
Sbjct: 182 NGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRLDALSHD 241

Query: 262 SGI---GGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSI-----TIKDISIARIS 313
            G+   G + +L+ + +  + + KG    +G V++L     N I     ++ +   AR +
Sbjct: 242 QGMVAHGVIYLLEMDDLDFIQQAKG----EGAVKDLLHATVNGINSILQSLPNSIFARRT 297

Query: 314 TYEFGIIMPNMDETELKIVAESII-TCVDDINPDPTGMAKANLSLGVVSNKRQSSTTTLL 372
             +F I++P++   E   +A  ++  C+    PD          LG        +   LL
Sbjct: 298 HNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDGVDNRDNFYHLGCAYFTAGDNVNQLL 357

Query: 373 SLLDNALAKAKSNPELNYGFISSDT--DKIILGKQQWKTLVEEAIHNDWFTFRYQAANSS 430
              D AL  A+     N+         ++   G  +W++ +E A+    F    Q    S
Sbjct: 358 DEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQPIMDS 417

Query: 431 WGKTFHREVFS-AFEKDGVRYTANQFLFALEQLNASHIFDQYVIERVI----QQLEKGEL 485
            G   H+E+F+ A +  G    A  F+    +       ++ +IERV+    Q+  KG++
Sbjct: 418 DGVEHHKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLVLLGQEQHKGQV 477

Query: 486 TDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVR 545
               ++N++  ++   +F  W+  TL ++  +   L FE+ E   V          + + 
Sbjct: 478 ---YSVNLSLDTLMSRAFTHWLKTTLLEYRHLTPQLIFEVSEDIVVQHQDKLQPKLDMIS 534

Query: 546 NAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHL 584
             GA   VD+ G+      YI E     +KL      H+
Sbjct: 535 KMGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHI 573