Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 879 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 1e-26
 Identities = 105/460 (22%), Positives = 195/460 (42%), Gaps = 21/460 (4%)

Query: 194 GEPLPRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMS 253
           G   P+  T   IY   G  +    V     AQ +   QL   AY DP++HL NR   M 
Sbjct: 409 GTIFPQNITISAIYDEVGEIRYFVAVFADISAQKQSEAQLAHLAYFDPLTHLPNRMKLMI 468

Query: 254 QLSGWLSES----GIGGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSITIKDISI 309
           QL   +  +           +  +  K + +  G+  GD M+ ELA RL++ +  +D+ +
Sbjct: 469 QLKQEIMHAKRLNSQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDV-L 527

Query: 310 ARISTYEFGIIMPNMDETELKIVAESIITCVDDINPDPTGMA-----KANLSLGV-VSNK 363
           +RI + EF  ++  +   E    A + I  +  +   P  ++     +   ++GV +   
Sbjct: 528 SRIGSDEFVALISGIQYHE---DATAAINQLRQVFEQPFVVSTGDHLRLTATMGVSLYPS 584

Query: 364 RQSSTTTLLSLLDNALAKAKSNPELNYGFISSDTDKIILGKQQWKTLVEEAIHNDWFTFR 423
             S+  TLL   D A+ +AKS    NY F +    K  +   + ++ +  A+  +     
Sbjct: 585 DGSNADTLLRNADAAMYRAKSEGRNNYAFYTESLTKESIEHLKLQSALYGALEQNALYLM 644

Query: 424 YQA-ANSSWGKTFHREVFSAFEKDGV-RYTANQFLFALEQLNASHIFDQYVIERVIQQ-- 479
           YQ   +    KT   E    +    + + + + F+   E+    +    +V+E   QQ  
Sbjct: 645 YQPKVDLVTRKTVGVEALLRWNDPILGQISPSVFIPVAEKSGLIYDIGLWVLETACQQGV 704

Query: 480 --LEKGELTDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYT 537
             L  G+    +A+N+A   + + SF+  + + L++    A  L  E+ E   +N P   
Sbjct: 705 HWLAAGKQFGRIAVNVAGQQLQRNSFVEDVKRILTQTGLPATCLELEVTESVMMNNPDVA 764

Query: 538 ALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLD-DERQKFTLTSI 596
                 + + G    VD++G  + SL+Y+ +     +K+D  F   +  D        ++
Sbjct: 765 IRDLKLLGDLGIVLSVDDFGTGYSSLNYLKKLPIHKLKIDQSFVRDIPFDTNNTAIAKAV 824

Query: 597 SRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIVDK 636
               H L +  +A  VET  Q DFL+++  +  QG++  +
Sbjct: 825 IVLGHALKLEIVAEGVETAEQADFLTQNLCDQAQGYLFSR 864