Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (307), Expect = 4e-32
 Identities = 101/426 (23%), Positives = 193/426 (45%), Gaps = 9/426 (2%)

Query: 218 QVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSES--GIGGVAILQAEFI 275
           Q++    +   E Q+L + AY DP++  G+R  + ++L    + +   +G +A+++A  +
Sbjct: 201 QLKSQMDSLTNENQKLHKVAYQDPITGFGSRPRFTTKLESISNHAVPQLGLMAMVKATEL 260

Query: 276 KELYEEKGYEAGDGMVRELADRL-KNSITIKDISIARISTYEFGIIMPNMDETELKIVAE 334
             + + +G  AGD  +  LA  + K S    D    R+S+ +F I +P++   +     +
Sbjct: 261 AHINQLQGRSAGDDYLSNLATCIRKASSKYPDAECYRVSSADFAIFLPDLVLKDGPKFLD 320

Query: 335 SIITCVDDINPDPTGMAKANLSLGVVSNKRQSSTTTLLSLLDNALAKAKSNPELNYGFIS 394
            +   +D+        + A++  G+V  ++ +    LLSL D A++ A++    +Y    
Sbjct: 321 QLKILLDEYQQMIKTESAAHV--GLVPYQQGADPVNLLSLADTAVSIAQTLGPNSYHIQE 378

Query: 395 SDTDKIILGKQQWKTLVEEAIHNDWFTFRYQAANSSWGKT-FHREVFSAFEKDGVRYTAN 453
                   G  +WK  + + I      F  Q           +RE+ + F     ++   
Sbjct: 379 KLNGDEQFGDDRWKLAINDLITRQALKFFQQPIQPCRNDVEVYRELLARFYNSEGKFLPT 438

Query: 454 QFLFAL-EQLNASHIFDQYVIERVIQQL-EKGELTDPLAINIAQGSISQPSFIRWISQTL 511
             + A+ E+   S   D+ V+   ++ L E   ++    INI+  S  Q  F+ W+   L
Sbjct: 439 TTVIAMAERHGMSTELDKLVVISTLKMLKENPTISGNFGINISAFSAHQELFVGWLRDIL 498

Query: 512 SKHLSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRP 571
            KH  +A+ L FEI E         +  F   V + G+   ++ +G +F S  + +E RP
Sbjct: 499 GKHRYIASRLVFEINESGMQANLGASYKFVREVHSVGSRVSIERFGMSFTSFKFFSEVRP 558

Query: 572 KYVKLDYLFTHHLD-DERQKFTLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQ 630
            Y+KLD  +T  +D D   KF +  +   A  +GI  IA+ VE Q +   L +  ++  Q
Sbjct: 559 DYIKLDGSYTASIDEDSNNKFFVRMMVDVARRIGIRVIATSVERQEEKLTLEKLLVDGLQ 618

Query: 631 GFIVDK 636
           G+ + +
Sbjct: 619 GYYISQ 624