Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 575 a.a., response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (248), Expect = 2e-25
 Identities = 94/423 (22%), Positives = 183/423 (43%), Gaps = 19/423 (4%)

Query: 231 QQLRERAYLDPVSHLGNRAYYMSQLSGWLSE----SGIGGVAILQAEFIKELYEEKGYEA 286
           ++L+E A  D ++ L NR  +   L+  ++     + +  V +L  +  K + +  G++ 
Sbjct: 136 EKLKELAEHDSLTKLMNRYGFELCLNRAIARVKRSNDLLAVILLDLDDFKAINDTLGHQT 195

Query: 287 GDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNMDETELK-IVAESIITCVDDINP 345
           GD ++ ++A RL   +   D+ IAR+   EF +++ + D      IVA  ++   +++  
Sbjct: 196 GDILLVKVASRLSTVLRDGDV-IARLGGDEFVVLVTDNDYKYFPMIVANRLLKAFEEVFC 254

Query: 346 DPTGMAKANLSLGVVS-NKRQSSTTTLLSLLDNALAKAKSNPELNYGFISSDTDKIILGK 404
                     S+GV   N+  S ++ L+   D A+ +AK        F S   DK +  +
Sbjct: 255 LGDNDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYR 314

Query: 405 QQWKTLVEEAIHNDWFTFRYQA---ANSSWGKTFHREVFSAFEKDGVRYTANQFLFALEQ 461
              ++ +  A+  + F   YQ    A +         +     +DG+  + +QFL   E+
Sbjct: 315 NHIESSLRIALRLNQFKVYYQVQVDAQTHQMVGMEALIRWLHPEDGL-ISPDQFLPIAEE 373

Query: 462 LNASHIFDQYVIERV-------IQQLEKGELTDPLAINIAQGSISQPSFIRWISQTLSKH 514
           +        +V+          + QL     +  +A+N++   I        I+  L   
Sbjct: 374 IGLMEEIGDWVLFETCRQAQYWLNQLAPTGHSFTIAVNLSASQIGHVDLYEKIAHVLKVT 433

Query: 515 LSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYV 574
                 L  EI E C + EPH  A   + +   G  F +D++G  F SL++I  F    +
Sbjct: 434 GLTPGALELEITENCLIEEPHEHAKILDKIAQLGVRFALDDFGTGFSSLEHIKLFPISVL 493

Query: 575 KLDYLFTHHLD-DERQKFTLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFI 633
           K+D  F    D DE+    L+++   A+   +T++A  +ET  Q +F +     + QG++
Sbjct: 494 KIDKSFIASYDKDEKDTRLLSALLNFAYGFNVTSVAEGIETLEQAEFCTVRHCNLLQGYL 553

Query: 634 VDK 636
             +
Sbjct: 554 FSR 556