Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 856 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (250), Expect = 2e-25
 Identities = 115/468 (24%), Positives = 201/468 (42%), Gaps = 20/468 (4%)

Query: 185 MEQVANNQFGEPLPRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEA--QQLRERAYLDPV 242
           M QVA  +    +PR   R +  V++   ++   V        +E    QL++RA  D +
Sbjct: 374 MPQVAKIKLLTTMPRIIERSISNVLNHEKEIVGTVVVLRDITQEELLKHQLQKRANFDGI 433

Query: 243 SHLGNRAYYMSQLSGWLSESGIGGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSI 302
           + L NR  +  QL  + S++    V  L  E  K + +  G+ AGD M+  +A  +++ +
Sbjct: 434 TGLLNRQAFEEQLPEFASQARSLAVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCL 493

Query: 303 TIKDISIARISTYEFGIIMPNMDETELKIVAESIITCVD-DINPDPTGMAKANLSLGVVS 361
             +++ +ARI   EFG+++ +     +  + + II  V   +  D     K  LS+GV  
Sbjct: 494 GPQEL-LARIGGDEFGLVICDRTALAVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAF 552

Query: 362 NKRQS-STTTLLSLLDNAL--AKAKSNPELNYGFISSDTDKIILGKQ---QWKTLVEEAI 415
            +    +   LL   D A   AKAK   +++   I  D DK +  ++   +W   + +AI
Sbjct: 553 GRAPYINAQELLKDADIACIAAKAKGTNQIH---IYDDKDKELTYQRNAPKWAVRIAQAI 609

Query: 416 HNDWFTFRYQAANS--SWGKTFHREVFSAFEKDGVRYTAN-QFLFALEQLNASHIFDQYV 472
             +     YQ      +  K    EV    ++   R  A  QF+ A E+       D+ V
Sbjct: 610 EENELLLYYQPIRGLGASSKRQRMEVLLRIQEPCGRILAPAQFIAAAERFKLMPEIDKEV 669

Query: 473 IERVIQQLE-KGELTDP--LAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGC 529
           I +    L    +L     ++IN++  S+     + +I++        +  + FEI E  
Sbjct: 670 IRKAFLWLSLNSQLWQDHCISINLSGNSLGAEGMVEYIAKQQQIFDIPSQCVCFEITETT 729

Query: 530 FVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLDDERQ 589
            +   H        +R  G  F +D++G  F S  Y+ E    YVK+D  F  +L    +
Sbjct: 730 AIQNRHRGMEMLRQLRKLGFSFALDDFGSGFASYGYLRELPVDYVKIDGCFVKNLAVNAK 789

Query: 590 KFTLT-SISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIVDK 636
            + +  SI      +GI T+A  VE Q  +D L    I   QG+ + +
Sbjct: 790 DYAIVKSIQDVCRVMGIETVAEFVENQEIIDRLQTIGINYAQGYAIGR 837