Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  100 bits (250), Expect = 4e-25
 Identities = 94/423 (22%), Positives = 193/423 (45%), Gaps = 17/423 (4%)

Query: 228  KEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSES----GIGGVAILQAEFIKELYEEKG 283
            K  + LR  A  D ++ L NR  +  +L+  +S++     I  +  L  +  K + +  G
Sbjct: 1073 KAEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMG 1132

Query: 284  YEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIMPNMDETELK-IVAESIITCVDD 342
            +  GD +++ +A RL++++   D ++AR+   EF II+  + +T+   +++E ++     
Sbjct: 1133 HHIGDLLLKAVAHRLQSAVREGD-TVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQA 1191

Query: 343  --INPDPTGMAKANLSLGVVSNKRQSSTTTLLSLLDNALAKAKSNPELNYGFISSDTDKI 400
              +  D +     ++ + +  N  +    +L+   D A+  AK+    N+ F ++  +++
Sbjct: 1192 PFLLDDKSLNISTSIGISLYPNDAKD-VDSLIKFADTAMYHAKALGRNNFQFYTNKLNEM 1250

Query: 401  ILGKQQWKTLVEEAIHNDWFTFRYQAANSSW-GKTFHREVFSAFEKDGVR-YTANQFLFA 458
                 Q +T +++AI ++  +  YQ       G     E    ++   +   +  +F+  
Sbjct: 1251 ATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPL 1310

Query: 459  LEQLNASHIFDQYVIERVIQQL----EKGELTDPLAINIAQGSISQPSFIRWISQTLSKH 514
             E+    +    +VI +  QQL    E G     +A+N++   + +   I  I   L+  
Sbjct: 1311 AEETGMINQIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL-KADIISTIEVALAVS 1369

Query: 515  LSVANLLHFEIPEGCFVNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYV 574
               A  L  E+ E   +  P  +    + ++  G    VD++G  + SL Y+  F    +
Sbjct: 1370 GLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTL 1429

Query: 575  KLDYLFTHHLDDERQKFTLTS-ISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFI 633
            K+D  F   + ++     +TS I   AH+L +  +A  VETQ QL+FL+    +  QGF+
Sbjct: 1430 KIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFL 1489

Query: 634  VDK 636
            + K
Sbjct: 1490 LSK 1492