Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 636 a.a., regulatory protein CsrD (RefSeq) from Shewanella sp. ANA-3

 Score =  103 bits (256), Expect = 3e-26
 Identities = 97/460 (21%), Positives = 192/460 (41%), Gaps = 18/460 (3%)

Query: 138 PGAAYAQLWKALIRLSIAFLAILVIGMFAVAFILKRSLRPLQLIVNKMEQVANNQFGEPL 197
           P   Y+  W  L+ L +  LA++ +  F   +   + L  ++ +  +   +   +  + L
Sbjct: 124 PFEHYSVSWYELLILGVGLLAVIALVRFGHVWF-SQQLDGIEELAQRSRLILQGKHEQAL 182

Query: 198 PRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSG 257
             P       +   + K+ E+++ A K + +  + +R   +LD  + +GNR +  ++L  
Sbjct: 183 ATPGNGKPRLINRALTKLLEELQDAHKERGRFDKFIRSNTFLDAQTRIGNRLFLNNRLDA 242

Query: 258 WLSESGI---GGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSI-----TIKDISI 309
              + G+   G + +L+ + +  L + KG  A    V+EL     NSI     T+ +   
Sbjct: 243 LSHDQGMVAHGVIYLLEMDDLDLLQQAKGESA----VKELLHATVNSINSILQTLPNSIF 298

Query: 310 ARISTYEFGIIMPNMDETELKIVAESII-TCVDDINPDPTGMAKANLSLGVVSNKRQSST 368
           AR S  +F I++P++   E   +A  ++  C+    PD          LG        + 
Sbjct: 299 ARRSHNQFAIVVPHVSLIEADQLASKLLKVCLSQPLPDDVENQDNFYHLGCAYFTAGDNV 358

Query: 369 TTLLSLLDNALAKAKSNPELNYGFISSDT--DKIILGKQQWKTLVEEAIHNDWFTFRYQA 426
             LL   D AL  A+     N+         ++   G  +W++ +E A+    F    Q 
Sbjct: 359 NQLLDEADMALRAAQLQGNSNWFMYDKGAIDEEFAKGSVRWRSFLENALVQRRFYPFSQP 418

Query: 427 ANSSWGKTFHREVFS-AFEKDGVRYTANQFLFALEQLNASHIFDQYVIERVIQQLEKGEL 485
              S G   H+E+F+ A +  G    A  F+    +       ++ +IERV+  L + + 
Sbjct: 419 VMDSDGVEHHKEIFTRARDNQGALVRATLFIPMANKCGLMPQIERQMIERVLGLLSQEKH 478

Query: 486 TDPL-AINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYTALFCNAV 544
            + + ++N++  ++   +F +W+  TL ++  +   L FE+ E   +          + +
Sbjct: 479 KNQVYSVNLSLDTLMSRAFTQWLKTTLLEYRHLTPQLIFEVSEDIVILHQDKLKPKLDMI 538

Query: 545 RNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHL 584
           R  GA   VD+ G+      YI E     +KL      H+
Sbjct: 539 RKMGARLCVDHVGQQVVGTYYIRECHFDMIKLHRSIVRHI 578