Pairwise Alignments

Query, 636 a.a., GGDEF domain-containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 878 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  105 bits (263), Expect = 7e-27
 Identities = 104/460 (22%), Positives = 194/460 (42%), Gaps = 21/460 (4%)

Query: 194 GEPLPRPNTRDLIYVVDGINKMSEQVEKAFKAQAKEAQQLRERAYLDPVSHLGNRAYYMS 253
           G   P+  T   IY   G  +    V     AQ +   QL   AY DP++HL NR   M 
Sbjct: 409 GTIFPQNITISTIYDELGDVRYFVAVFSDISAQKQSEAQLAHLAYFDPLTHLPNRMKLMM 468

Query: 254 QLSGWLSES----GIGGVAILQAEFIKELYEEKGYEAGDGMVRELADRLKNSITIKDISI 309
           QL   L  +           +  +  K + +  G+  GD M+ ELA RL++ +  +D+ +
Sbjct: 469 QLKQELRHAKRLNAQLATVFIDVDLFKHINDSFGHSIGDEMLVELAKRLRSQLQEQDV-L 527

Query: 310 ARISTYEFGIIMPNMDETELKIVAESIITCVDDINPDPTGMA-----KANLSLGV-VSNK 363
           +RI   EF  ++  +   E    A + I  +  +   P  ++     +   S+GV +   
Sbjct: 528 SRIGGDEFVALISGIQSHE---DAAAAINQLRQVFEQPFVVSTGDHLRLTASMGVSIYPD 584

Query: 364 RQSSTTTLLSLLDNALAKAKSNPELNYGFISSDTDKIILGKQQWKTLVEEAIHNDWFTFR 423
             S+  TLL   D A+ +AKS    N+ F +    K      + ++ +  A+  +     
Sbjct: 585 DGSNADTLLRNADAAMYRAKSEGRNNFAFYTESLTKQSFEHLKLQSALYGALEQNALYLM 644

Query: 424 YQAANSSWG-KTFHREVFSAFEKDGV-RYTANQFLFALEQLNASHIFDQYVIERVIQQ-- 479
           YQ        KT   E    +    + + +   F+   E++   +    +V+E    Q  
Sbjct: 645 YQPKLDLVSRKTIGVEALLRWNDPILGQISPGVFIPVAEKIGLIYDIGLWVLETACLQGV 704

Query: 480 --LEKGELTDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCFVNEPHYT 537
             L +G+    +A+N+A   + + SF+  + + L++    A  L  E+ E   ++ P   
Sbjct: 705 RWLTEGKPFGRIAVNVAGQQLQRSSFVEDVKRILTQTGLPATCLELEVTESVMMHNPDVA 764

Query: 538 ALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLFTHHLD-DERQKFTLTSI 596
                 + + G +  VD++G  + SL+Y+ +     +K+D  F   +  D        ++
Sbjct: 765 IRDLKLLGDLGIELSVDDFGTGYSSLNYLKKLPIHKLKIDQSFVRDIPFDTNNTAIAKAV 824

Query: 597 SRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQGFIVDK 636
               H L +  +A  VETQ Q +FL+++  +  QG++  +
Sbjct: 825 IALGHALKLEIVAEGVETQAQAEFLTQNLCDQAQGYLFSR 864