Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  167 bits (424), Expect = 5e-46
 Identities = 125/446 (28%), Positives = 223/446 (50%), Gaps = 22/446 (4%)

Query: 39  TAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGG 98
           TA L+ +TP      L ++V F +    WA+ A +D   +  G V   S  + +Q+LEGG
Sbjct: 13  TALLVDDTPVRRVGYLMLLVTFGLFG-GWAALAPLDSSALAPGVVTVKSYRKTVQHLEGG 71

Query: 99  LVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDEN 158
           +V+++ V +G+ V+ G  L++LD+T+ RS+      Q+     + LQL A + +      
Sbjct: 72  IVRELRVHDGDLVKTGDVLLVLDNTQARSEMETTRSQLI----AALQLQARLEA------ 121

Query: 159 FEEKNWANSVQLDYSKLAFPPVLS--DSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQ 216
            E       + +     A P V    DS+  + + +R     ++      +  + +QI+ 
Sbjct: 122 -ERDALPEPLAVPALDPADPRVQEARDSEARIFQTRRTSLLGEIGLQEKTIGQIEEQIRG 180

Query: 217 KQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTST 276
            +  +   +A    L  SY   ++E+     L  EG V K  L + +R L+  + E+  +
Sbjct: 181 FKAIIASKQA----LAASY---QEEIVDLRALLAEGYVDKQRLREQERSLSRLQTEIAES 233

Query: 277 ELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVV 336
           + +I      + EA L  +   + F +E    L  A+ K+  L E    L+D+  RT ++
Sbjct: 234 QSEIAQAHVHIDEARLKILQLKKTFASEVAGLLGDARTKVYELRERLATLQDRDQRTDIL 293

Query: 337 SPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFS 396
           +P +G V  + V+T+G V+ PG  +++IVP  + L++EAQ++P DI  +     A ++FS
Sbjct: 294 APESGMVMGMTVHTLGAVVSPGTALLDIVPANEELIIEAQVSPMDIDRIALGKLADIRFS 353

Query: 397 AYDFTRYGGLEGTLEHISADTTQDEE-GNSFYLVRVRTKETTLGHDQNLPIIPGMTASVD 455
           A+  +    +EG L  ISAD   +++ G ++YL RV   +       NL ++PGM   V 
Sbjct: 354 AFKSSTTPVIEGQLVQISADRLINKDTGTAYYLARVALTDKGRQALGNLTLVPGMPVEVL 413

Query: 456 IITGKRTVLDYLLKPILSAQSNALRE 481
           + TG RT+L YL++P  +  + +L E
Sbjct: 414 VNTGARTLLQYLIQPASNVFARSLIE 439