Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., Type I secretion system, membrane fusion protein LapC from Pseudomonas fluorescens FW300-N2E2

 Score =  335 bits (860), Expect = 1e-96
 Identities = 184/443 (41%), Positives = 273/443 (61%), Gaps = 22/443 (4%)

Query: 41  ALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLV 100
           AL+ + P   R+ +W ++ FF+    WA++A ID+VT G GK +PSS++Q +QNLEGG+V
Sbjct: 22  ALIEDAPRVVRLTIWGIIGFFVFLALWANFAVIDEVTKGDGKAIPSSKIQKVQNLEGGIV 81

Query: 101 KQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFE 160
            ++ V+EG+ V+ G  LI LDDTRF S+  E E    ++   V +LSA +          
Sbjct: 82  AELFVKEGQIVEAGAPLIRLDDTRFVSNVGETEADRLSMLLRVERLSAEV---------- 131

Query: 161 EKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQD 220
                     D   L FP  +  + P     +   Y      L +++  L +Q+ Q+QQ+
Sbjct: 132 ----------DDRPLNFPADVLKAVPGQAASEESLYISRRQQLHDEIGGLQEQLIQRQQE 181

Query: 221 LIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKI 280
           L E  ++    R      ++E++++EPL  +G V  +E+L+L+R   +TR +L +T L I
Sbjct: 182 LREFVSKQAQYRSGLALQRQEINMSEPLVAQGAVSPVEVLRLKRAEVETRGQLDATTLAI 241

Query: 281 PVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVT 340
           P  +SA++E          KFR++   +LN+A+  L+    +   LED+V+RT+V SPV 
Sbjct: 242 PRAESAIKEVQRKIDETRGKFRSDALTQLNEARTDLNKAQATGKALEDRVSRTLVTSPVR 301

Query: 341 GTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDF 400
           G V  L VNT+GGVIQPG +++EIVP +DT+LVEA+I PQDI FL P   A VKF+AYD+
Sbjct: 302 GIVNKLLVNTIGGVIQPGSDLVEIVPLDDTILVEAKIRPQDIAFLHPGQDATVKFTAYDY 361

Query: 401 TRYGGLEGTLEHISADTTQDEE-GNSFYLVRVRTKETTLGHDQN-LPIIPGMTASVDIIT 458
           T YGG++  LE I ADT  DE+   ++Y++++RT+ + LG D+  L IIPGM ASVDIIT
Sbjct: 362 TIYGGMKAKLEQIGADTITDEDKKTTYYIIKLRTERSHLGTDEKPLLIIPGMVASVDIIT 421

Query: 459 GKRTVLDYLLKPILSAQSNALRE 481
           GK+TVL YLLKPI+ A++ AL E
Sbjct: 422 GKKTVLSYLLKPIIKARAEALHE 444