Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 438 a.a., HlyD family secretion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  177 bits (449), Expect = 6e-49
 Identities = 122/422 (28%), Positives = 216/422 (51%), Gaps = 29/422 (6%)

Query: 67  WASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFR 126
           WA+ A +D      G V   +  + +Q+LEGG+VK +L  +G+ V++   LI+LDD + R
Sbjct: 38  WAAIAPLDGAAYAPGVVTVQAYRKTVQHLEGGIVKALLAHDGDIVKRDDPLIILDDAQLR 97

Query: 127 SDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQP 186
            ++     Q+    A   +L A   S+ +              + +  +A P  +   + 
Sbjct: 98  FEYEMARGQLIAARAMEARLIAERDSLPM--------------ISFGDIADPDSVRGMEA 143

Query: 187 DLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARI---INLRQSYDYAKKELD 243
              E +    RQ   +   Q++VL +++ Q +Q +   E+ +   ++L +SY     E+D
Sbjct: 144 RQGETRVFSARQG--SRLGQIAVLRERVGQFRQQIKGLESMVGSKVHLEKSYS---GEID 198

Query: 244 ITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRT 303
               L  +G V K  LL+ +R+L   R E+      I   +  + E  L  +   + F  
Sbjct: 199 ELADLLKQGFVDKQRLLEQERKLGLLRSEVADHRSTIDRTRLQINETQLQILQVDKDFNA 258

Query: 304 EQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIE 363
           +   +L + Q ++  L E    LED+++R V+ +P  G V  + V+T+GG+++P   +++
Sbjct: 259 DVVKQLAEVQTRIYDLKEKTSALEDRLSRIVIRAPEAGMVIDMSVHTIGGIVRPATPLLD 318

Query: 364 IVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISAD-TTQDEE 422
           IVP+   L++EAQ+AP DI  +     A ++F A++      +EG +  +SAD  T ++ 
Sbjct: 319 IVPSVSDLVIEAQVAPVDIDRIAIGKRADIRFGAFNSATTPVIEGEVSSVSADRMTNEKT 378

Query: 423 GNSFYLVRVRTKET---TLGHDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNAL 479
           G ++YL RVR  E    TLG  +   ++PGM A V IITG+RT+L YL++P  +A S ++
Sbjct: 379 GTAYYLARVRVTEAGARTLGERK---LLPGMPADVLIITGQRTLLQYLMQPARNALSQSM 435

Query: 480 RE 481
            E
Sbjct: 436 IE 437