Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., type I secretion membrane fusion protein, HlyD family from Pseudomonas stutzeri RCH2

 Score =  357 bits (917), Expect = e-103
 Identities = 192/454 (42%), Positives = 289/454 (63%), Gaps = 23/454 (5%)

Query: 30  EELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQV 89
           ++ +Y+ +   A+L ++P  AR+ +W+        + WA++A +++VT G+GK +PSS++
Sbjct: 17  QDTEYMPEIQGAILEDSPWLARLTVWLTALLLAAVLIWANYAVLEEVTTGEGKAIPSSKI 76

Query: 90  QVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSAS 149
           Q +QNLEGG+V QI VREG+ V KG  L+ LD+TRF S+  E E +  +L A V +L+A 
Sbjct: 77  QTVQNLEGGIVAQIYVREGQVVNKGDTLLRLDNTRFLSNQEETEAERLSLLARVERLAA- 135

Query: 150 ISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSV 209
                              + +   LA P  ++   P L E +R  Y      LR++  +
Sbjct: 136 -------------------EAEGRPLALPEEITRDAPQLAEDERALYESRQQRLRSEQRI 176

Query: 210 LSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDT 269
           L +Q+ QKQQ++ E  ++    R S    ++EL+++ PL   G + ++E+L+L+R + D 
Sbjct: 177 LKEQLTQKQQEVAEFRSKQQQYRSSLSLIQQELNMSTPLVETGAISQVEILRLRRSIVDV 236

Query: 270 RRELTSTELKIPVLKSAVREAMLSRINAAQ-KFRTEQQDKLNQAQDKLSSLTESAVGLED 328
           R  L +T L +P  ++A  E   SRI  ++  FR E    LN A+  L  +T ++V ++D
Sbjct: 237 RGALDATTLALPRAEAAASEIQ-SRIEQSELAFRAEAFKDLNAARTLLQKITATSVAIDD 295

Query: 329 KVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPD 388
           +V+RT VVSPV G +K L +NT+GGV+QPG +++EIVP ED+LL+EA++ PQDI FL P 
Sbjct: 296 RVSRTTVVSPVHGIIKQLRINTIGGVVQPGSDLLEIVPLEDSLLIEAKVRPQDIAFLHPG 355

Query: 389 LPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGH-DQNLPII 447
             A+VKFSAYD+T YGGL+  LE ISADT  D++G SFYL++VRT++  LG     L II
Sbjct: 356 QKAMVKFSAYDYTIYGGLKANLELISADTITDKDGRSFYLIQVRTEKNYLGSPGHQLVII 415

Query: 448 PGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           PGM A+VDIITG+++VLDY+LKPIL A+  ALRE
Sbjct: 416 PGMVATVDIITGEKSVLDYMLKPILKARHEALRE 449