Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 422 a.a., hypothetical protein from Azospirillum brasilense Sp245

 Score =  173 bits (438), Expect = 1e-47
 Identities = 127/425 (29%), Positives = 202/425 (47%), Gaps = 28/425 (6%)

Query: 66  AWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRF 125
           AW+  A +D   V  G VV  S+ + +Q+LEGG+V+ ILV EG +V+ G  L++LD T+ 
Sbjct: 16  AWSLTAPLDSAAVAAGHVVVESRRKTVQHLEGGIVRGILVAEGARVEAGAPLVVLDQTQA 75

Query: 126 RSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLS--- 182
           RS       Q   L A   +L A            E+  A+ V       AFPP L+   
Sbjct: 76  RSALDTLRSQQDELLAREARLLA------------ERAGADEV-------AFPPHLAVRA 116

Query: 183 ----DSQ-PDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDY 237
               D++  +L++ QR  +    ++LR Q+ +L Q+  Q   +     A++ +       
Sbjct: 117 AHDQDARIAELLDGQRRLFAARWESLRGQVDILIQRTAQLDAEADGLRAQVASTEVQLSL 176

Query: 238 AKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINA 297
             +E+     L  +G+  K  LL L+R+  +           I   +    E  L  ++ 
Sbjct: 177 IAEEMQDARTLVVKGLERKSRLLSLEREAANLGGRRGEYLASIARAEQRRGETGLQILDL 236

Query: 298 AQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQP 357
             K   E   +L + Q KL  L E      D ++RTVV +P TG V  + V+T GGVI  
Sbjct: 237 RNKRAEELATELREVQGKLRELDERLHAAGDVLDRTVVRAPATGMVMNVQVHTAGGVIGA 296

Query: 358 GMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADT 417
           G  I++I P +D+LL+EA++ P DI  +   LPA ++ +A+       L G + ++S D 
Sbjct: 297 GKPILDIAPDDDSLLIEARLRPTDIDNVHTGLPARIRLTAFKQRTTPVLSGRVTYVSGDA 356

Query: 418 TQDEE-GNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQS 476
             D+  G++ Y   +      L     L + PGM A V ++TG+RT  DY L P+  + +
Sbjct: 357 LTDQRTGDASYSAHIVVDRGELQRAGGLNLQPGMPAEVMVVTGRRTAADYFLAPLTDSFA 416

Query: 477 NALRE 481
            A RE
Sbjct: 417 RAFRE 421