Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., hypothetical protein from Azospirillum brasilense Sp245

 Score =  229 bits (585), Expect = 1e-64
 Identities = 130/427 (30%), Positives = 229/427 (53%), Gaps = 20/427 (4%)

Query: 56  VMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQ 115
           V +A F+ A+ WA+ AE++  +   G VVP S  Q +Q+ EGG+V+ ILV+EG+ V  GQ
Sbjct: 20  VSIAAFLAALGWAAIAELNVSSSAPGDVVPLSYNQSVQHFEGGIVRDILVQEGDSVTAGQ 79

Query: 116 QLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKL 175
            L+ LD T+ R+D  E + ++ +L+A   +L A +                        +
Sbjct: 80  ALVELDQTKIRADLEELKLRLGSLSADTARLEAEVGR-------------------REAI 120

Query: 176 AFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSY 235
            FP  L   +PDLV + RD +R   D L + L +  Q I Q++Q +    ARI   + + 
Sbjct: 121 TFPERLLRERPDLVAQTRDLFRARRDRLASDLDIQRQDIAQREQQVAAVRARIGGSQVAQ 180

Query: 236 DYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRI 295
              +++L I+E L    +  +++ L+L R        +      +   ++A+ EA    +
Sbjct: 181 GLIREQLSISETLLKREITNRMKHLELLRDDARVSSAIAEDRATLAQAEAALAEARSKLV 240

Query: 296 NAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVI 355
              +K+  E ++ L++A+     L++     +D ++R+ + +P+ G VKTL V+T G V+
Sbjct: 241 WIGRKYEEESRNALDEARRNHDELSQRLTRYQDSLDRSSLRAPMDGIVKTLAVSTKGAVV 300

Query: 356 QPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISA 415
           + G  ++E+VP +  L+V+A++  QDI ++RPD P +V  +  D +R+G +EG +  IS 
Sbjct: 301 KAGETVVELVPRDGKLVVDARLPVQDIGYVRPDQPVVVTLAGGDASRFGHIEGRVRTISP 360

Query: 416 DTTQDEEGNSFYLVRVRTKETTLGH-DQNLPIIPGMTASVDIITGKRTVLDYLLKPILSA 474
           DT  D    S+Y VRV    T   +  +   + PG+  +  I+TG+RT+LDY+  P+L+ 
Sbjct: 361 DTLLDANKQSYYKVRVELPVTRFDYGGKTYELFPGVRVTCSILTGRRTILDYVFSPVLNG 420

Query: 475 QSNALRE 481
             +A++E
Sbjct: 421 LQHAMQE 427