Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 85.9 bits (211), Expect = 3e-21
 Identities = 93/428 (21%), Positives = 187/428 (43%), Gaps = 75/428 (17%)

Query: 57  MVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQ 116
           +V  FI  I   S+ +   V      + P  + +++Q    G V+QI VR  ++VQ+G  
Sbjct: 193 LVLGFIGTIILTSFLKYKVVVKAPALIRPIGETRLVQAAVEGKVRQIAVRSNQEVQQGDP 252

Query: 117 LILLDDTRFRSDFREREQQVANLTASVLQLSA--SISSVIIDENFEEKNW-ANSVQLDYS 173
           +I++DD++      +R+Q + ++  + L+L    S  + I +E   E N  A  + ++ +
Sbjct: 253 IIVIDDSQ---QITKRDQLIDSIAKNQLKLQQIESQKAAIAEEMLAESNKVARGIDVNQA 309

Query: 174 KLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQ 233
            +      +++   L   +  +Y+     L N  ++    +++K      A+A +   R+
Sbjct: 310 DIQ----TAEANLALAADEYSRYQ----TLSNAGAIADLLVQEKLASFRVAQANLSRARE 361

Query: 234 SYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLS 293
                     +T     +G+  +  L ++Q QL                           
Sbjct: 362 ----------LTAQTEEQGLATQARLRQMQDQL--------------------------- 384

Query: 294 RINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGG 353
              A Q+  T QQ K+ Q +     L +  + L +    TVV +P++G ++++ +     
Sbjct: 385 ---AQQESETLQQIKVEQKE-----LQQMNINLAN----TVVRAPISGIIQSINLRNPDQ 432

Query: 354 VIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHI 413
           V+  G  +  I PT+  L ++A +  Q+I+ +       ++ +A  +  +G L+G ++ I
Sbjct: 433 VVGVGQEVARIFPTQSGLTIKALVPSQNILPVALGQRVQLRIAACPYPDFGTLDGKVQAI 492

Query: 414 SAD----------TTQDEEGNS-FYLVRVRTKETTLGHDQNL-PIIPGMTASVDIITGKR 461
           + D          T +    NS  Y V ++ ++ +L   Q +  I PGM A  DIIT + 
Sbjct: 493 APDSGGSSSSAAQTNEPVAANSQAYEVTIKPEDRSLTDGQRVCKIRPGMDAEADIITNEE 552

Query: 462 TVLDYLLK 469
           TVL ++L+
Sbjct: 553 TVLKFMLR 560