Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., toxin secretion transmembrane protein from Sinorhizobium meliloti 1021

 Score =  157 bits (398), Expect = 5e-43
 Identities = 124/434 (28%), Positives = 209/434 (48%), Gaps = 29/434 (6%)

Query: 56  VMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQ 115
           V +A    A AWA+  ++    V  G  V  S V+ +Q+  GG++ +ILV EG+ V+ GQ
Sbjct: 23  VGLALIGAAGAWATTTQLAGAVVASGNFVVDSHVKKVQHPTGGVIGEILVEEGDWVKAGQ 82

Query: 116 QLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKL 175
            L+ LD T+ +++ R   +++  L A + +L A        ++  E  +   +++   + 
Sbjct: 83  VLMRLDPTQTKANLRIVTKRLDELMARLARLEAE------RDDRGELEFPTELKVRAKER 136

Query: 176 AFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSY 235
           A    ++        R+R +          + S L ++I Q Q ++   +A+    +Q+Y
Sbjct: 137 AVASAINGESKLFEYRRRSR--------EGRRSQLLERIVQLQHEIAGLDAQ----QQAY 184

Query: 236 DYAKKELDIT----EPLANEGVVPKIELLKLQRQ---LNDTRRELTSTELKIPVLKSAVR 288
           D     LD        L   G+V    L +L+ +       R E  + + +       + 
Sbjct: 185 DRGLSILDAEIASLRSLHERGIVSVQRLNELETRAATFEGLRGEKIAQQAQAA---GRIA 241

Query: 289 EAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYV 348
           E  L  +   +  +TE   +L + Q +L   TE  +  ED++ R  +++P  G V  L V
Sbjct: 242 ETRLQILQIDEDLKTEVGRELREVQAQLGEFTERKIAAEDQLRRIDMLAPQGGIVHQLNV 301

Query: 349 NTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEG 408
           +TVGGVI P   ++ IVP  D L +EA+I PQDI  ++     +++ SA++      L G
Sbjct: 302 HTVGGVISPADVVMSIVPDSDRLAIEARIRPQDIDQIQLGQDVVLRLSAFNQRTTPELGG 361

Query: 409 TLEHISADTTQD-EEGNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRTVLDYL 467
           ++  I+AD T+D   G S+Y+VRV      L    +L  +PGM A   I TG+RT L YL
Sbjct: 362 SVSRIAADLTEDPRSGLSYYVVRVAVPGAELARLGSLEPLPGMPAEAFIQTGQRTALSYL 421

Query: 468 LKPILSAQSNALRE 481
           +KP+    S A RE
Sbjct: 422 IKPLSDQISRAFRE 435