Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family secretion protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  457 bits (1175), Expect = e-133
 Identities = 223/457 (48%), Positives = 332/457 (72%), Gaps = 4/457 (0%)

Query: 27  LTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPS 86
           LTA +L+ VDD   A++ + P S R+ +W + +     + WA +AE+D+VTVG GKV+PS
Sbjct: 5   LTARDLEMVDDVYGAMMTDAPTSHRLTIWALTSLIFAFLIWAYFAELDQVTVGTGKVIPS 64

Query: 87  SQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQL 146
           SQ+QVIQ+L+GG+++++ VREG  V KG+ L  +DDTRFRSDF ++E++V +L A+V+++
Sbjct: 65  SQIQVIQSLDGGVLQELFVREGNIVAKGEPLARIDDTRFRSDFAQQEEEVFSLQANVIRM 124

Query: 147 SASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQ 206
              ++S+ + +   +  W   V++   +L FP  LS  + +LV RQ+ +Y   LDNL NQ
Sbjct: 125 RTELNSITVSDMASD--WREQVRIVKQELIFPDALSAQKAELVARQQAEYNGRLDNLENQ 182

Query: 207 LSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQL 266
           L +L++QI+Q+QQ+  E   +I  +  S+    +EL++T PLA +G+VP++ELLKL+R +
Sbjct: 183 LEILARQIQQRQQENEELTTKIATMTTSFQLISRELELTRPLAQKGIVPEVELLKLERTV 242

Query: 267 NDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGL 326
           N+ + EL +     P +K+ + EA+L R  A   F  + + +LN  Q +LS ++E+ VG 
Sbjct: 243 NELQGELKAMRQLRPKIKATLDEAILKRREAVFVFAADTRAQLNDMQTRLSRMSEAQVGA 302

Query: 327 EDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLR 386
           +DKV++ V+ SPV GTVKT+++NT+GGV+QPG++I+EIVP+ED LL+EA+I P+DI FL 
Sbjct: 303 QDKVSKAVITSPVNGTVKTVHINTLGGVVQPGVDIMEIVPSEDQLLIEAKITPKDIAFLH 362

Query: 387 PDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQ--NL 444
             LPA+VK +AYDFTRYGGL+GT+EHISADTTQDEEGNSFYL+RVRT E++L  D    +
Sbjct: 363 VGLPAVVKVTAYDFTRYGGLQGTVEHISADTTQDEEGNSFYLIRVRTAESSLVKDDGTEM 422

Query: 445 PIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           PIIPGM  SVD+ITG+R++L+Y+L PIL A+  ALRE
Sbjct: 423 PIIPGMLTSVDVITGQRSILEYILNPILRAKDTALRE 459