Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

 Score =  196 bits (499), Expect = 1e-54
 Identities = 124/435 (28%), Positives = 230/435 (52%), Gaps = 27/435 (6%)

Query: 54  LWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQK 113
           L ++VAF  L + WA+ A +       G +V  S  + +Q+LEGG++K+ILV+EG++V +
Sbjct: 77  LIILVAFGGLGL-WAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDRVHQ 135

Query: 114 GQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYS 173
           G  LI L+ T+  +         A + ++  +   ++ + ++ E  E+K           
Sbjct: 136 GDPLIRLETTQALAS--------AAVVSNQFETYQALEARLVAERDEQKT---------- 177

Query: 174 KLAFPP------VLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEAR 227
            + FPP       L     ++++ Q+ Q+ +   ++  Q+++L ++I Q +Q++   + +
Sbjct: 178 -ITFPPDLIAVAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQ 236

Query: 228 IINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAV 287
             + ++  +  + E+     L  +G  P+  +L ++R++     E+ +    +   + AV
Sbjct: 237 RQSKKRQLEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAV 296

Query: 288 REAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLY 347
            EA L  I   Q+FR +   +L + Q KLS L E      D ++RTV+++   G ++ L 
Sbjct: 297 GEAELQIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLA 356

Query: 348 VNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLE 407
           V+T+GG+I+PG  ++EIVP +D L++EAQI+P+DI  + P +   V+FSA++      ++
Sbjct: 357 VHTLGGIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIID 416

Query: 408 GTLEHISADT-TQDEEGNSFYLVRVRTKETTLGHDQNLPIIPGMTASVDIITGKRTVLDY 466
           G L  +SAD    + + +S+Y  R+   +  L     L +  GM   V I TG+RTVL Y
Sbjct: 417 GVLSQVSADRFVNERDSSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHY 476

Query: 467 LLKPILSAQSNALRE 481
            LKP+  A  + L E
Sbjct: 477 FLKPLEDALFHGLIE 491