Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 365 a.a., HlyD family secretion protein from Rhodopseudomonas palustris CGA009

 Score = 60.8 bits (146), Expect = 7e-14
 Identities = 65/272 (23%), Positives = 117/272 (43%), Gaps = 24/272 (8%)

Query: 194 DQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGV 253
           +Q +  LD  R   +    ++ ++   + +A A++     S  +A+ ++    PLA  G 
Sbjct: 89  EQAKAQLDQARAGKARAEAELNRQYAQIEQANAQLGQSEVSLAFAENQVARYRPLAASGA 148

Query: 254 VPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQ 313
                  +++ Q +  R ++     ++   +  V  ++ ++I  AQ    + + +L+QAQ
Sbjct: 149 EATERYDQIRNQRDQARAQVALNNAQVESARRMV-PSIEAQIAEAQAAIEQAEAQLHQAQ 207

Query: 314 DKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLV 373
             L +              TVVVSP+ G V  L    VG  +QPGM ++ +VP  D L +
Sbjct: 208 IDLDN--------------TVVVSPIAGRVGDLTAR-VGQFVQPGMRMMTVVPLHD-LYL 251

Query: 374 EAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGG-----LEGTLEHISADTTQDEEGNSFYL 428
           EA      I  +R   PA ++  A    +  G       GT    S    Q+  GN   +
Sbjct: 252 EANYKETQIGLMRVGQPATIEVDALPNEKLHGEVLSFSPGTGSEFSLLPPQNATGNFTKV 311

Query: 429 V-RVRTK-ETTLGHDQNLPIIPGMTASVDIIT 458
           V RV  +     G +    ++PG++  VD+ T
Sbjct: 312 VQRVPVRIRIDAGPEARKVLVPGLSIVVDVDT 343



 Score = 37.7 bits (86), Expect = 7e-07
 Identities = 40/206 (19%), Positives = 77/206 (37%), Gaps = 16/206 (7%)

Query: 55  WVMVAFFILAI------AWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREG 108
           W ++   IL +       W  W             + + QV +  N+ G LV  + V + 
Sbjct: 9   WGLITAAILLLLGGTGYGWYWWTTGSYFQSTNDAYLKADQVSIAPNVSGYLVG-VPVVQN 67

Query: 109 EQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASIS---------SVIIDENF 159
           + +  G QL  +DD  +R    + + Q+    A   +  A ++         +  + ++ 
Sbjct: 68  QTIAAGDQLAKIDDRSYRVRVEQAKAQLDQARAGKARAEAELNRQYAQIEQANAQLGQSE 127

Query: 160 EEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQ 219
               +A +    Y  LA     +  + D +  QRDQ R  +     Q+    + +   + 
Sbjct: 128 VSLAFAENQVARYRPLAASGAEATERYDQIRNQRDQARAQVALNNAQVESARRMVPSIEA 187

Query: 220 DLIEAEARIINLRQSYDYAKKELDIT 245
            + EA+A I         A+ +LD T
Sbjct: 188 QIAEAQAAIEQAEAQLHQAQIDLDNT 213