Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., type I secretion membrane fusion protein, HlyD family from Phaeobacter inhibens DSM 17395

 Score =  194 bits (494), Expect = 3e-54
 Identities = 135/443 (30%), Positives = 225/443 (50%), Gaps = 66/443 (14%)

Query: 43  LLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQ 102
           L  T   A  I++++    ++ + WAS+A +D++    G+VV SS+ Q++QNLEGG++ +
Sbjct: 8   LRETSRGASRIIYLVAGALVVFLLWASFAWVDEIVRADGEVVSSSRSQIVQNLEGGILAE 67

Query: 103 ILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEK 162
           + V +G+ V+ GQ L  L DT+FR+   + + ++  L     +L A +     D N  E+
Sbjct: 68  LHVHQGDVVKAGQILARLQDTKFRAAADDLQDRIDALEIKQYRLEAELEGAF-DFNVPEE 126

Query: 163 NWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLI 222
               S  +  S+ A   +L+  Q D   R RD  R+ LD L+++L+ + +  K++   LI
Sbjct: 127 LADRSPGIYTSERA---LLNARQTDFTSR-RDSAREILDQLKDELANMKRLHKKEIVALI 182

Query: 223 EAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPV 282
           E               + +  +++  A    +     L+L    + T RELTS       
Sbjct: 183 EVN-------------RSQKSVSDAQAKYNEIGTQSELELAEDYSKTLRELTS------- 222

Query: 283 LKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGT 342
                                  + +L  AQD+L              NRTV+ SP+ G 
Sbjct: 223 ----------------------YRQELRLAQDQL--------------NRTVITSPMAGI 246

Query: 343 VKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTR 402
           V +L V T+GGVI+PG  I+EI+P  + + VEA++ P++I  ++P   A +K SAYD+T 
Sbjct: 247 VNSLAVTTIGGVIRPGEEIVEIIPLGEEMFVEARVKPENIASVQPGQDATIKLSAYDYTI 306

Query: 403 YGGLEGTLEHISADTTQDE---EGNSFYLVRVRTKETTL-GHDQNLPIIPGMTASVDIIT 458
           YG L G ++ +SADT +DE       +Y V V+   +      Q + I PGM A+ ++ T
Sbjct: 307 YGSLRGKVDFVSADTFEDERNPRAEPYYRVTVKVDRSEFTERQQAIEIRPGMRATAELQT 366

Query: 459 GKRTVLDYLLKPILSAQSNALRE 481
           G +T+L+Y+LKP+  ++  ALRE
Sbjct: 367 GSKTILNYMLKPLYKSR-EALRE 388