Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (450), Expect = 5e-49
 Identities = 123/432 (28%), Positives = 209/432 (48%), Gaps = 23/432 (5%)

Query: 51  RIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQ 110
           RI  ++  A FIL I W+ +  I+++   +G+VVP    QVIQ+  GG +  I V EG+ 
Sbjct: 31  RITFFIATAVFILLI-WSIFTNIEEIAKAKGQVVPLGHRQVIQSQTGGTLASIAVAEGDL 89

Query: 111 VQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQL 170
           VQKG  +     T  ++   E + + ANL   + + +A +     D N  +         
Sbjct: 90  VQKGDLIANFVATDSQALKEELQSKQANLELKIERYTAFLEEREPDFNAYQ--------- 140

Query: 171 DYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIIN 230
               L FP +++     L   + +Q +Q +      +++    + + + +L   E  I  
Sbjct: 141 ----LGFPALVAQHINALA--RMNQEKQAI------IALSESDVAKSEAELASVEQEITP 188

Query: 231 LRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREA 290
           L+      ++ L +   +  +  V K+ +L+ Q++L+   REL   E +  VL+  +   
Sbjct: 189 LKDQIRSVEQTLKMMNSVKEQQAVSKLRMLESQQKLDAYIRELKVLEGRRSVLQRNIDNQ 248

Query: 291 MLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNT 350
                        E  +K   AQ +L  +       +  V +  V SPV G ++++  N+
Sbjct: 249 EKQLAQKQASLFNEVGEKRTDAQAELLGIVARLKSSDSLVQQNRVTSPVDGIIQSIPNNS 308

Query: 351 VGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTL 410
            G VIQPG  +  IVPT  T L+EA+++P+DI F+     A +K  A+D++RYG ++G +
Sbjct: 309 AGSVIQPGGTVAVIVPTTPTALLEAKLSPRDIGFVTVGQKARIKIDAFDYSRYGAIDGLV 368

Query: 411 EHISADTTQDEEGNSFYLVRVRTKETTLG-HDQNLPIIPGMTASVDIITGKRTVLDYLLK 469
           + IS  T  DE+G  FY V++   +   G     L +IPGMT   DI+TG +TV  YL K
Sbjct: 369 KKISPSTDADEKGGVFYKVQIAIDKPYFGDQPDKLALIPGMTGEADIVTGDKTVFQYLWK 428

Query: 470 PILSAQSNALRE 481
           P+ +  + A  E
Sbjct: 429 PVFTNVTEAFGE 440