Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella loihica PV-4

 Score =  483 bits (1244), Expect = e-141
 Identities = 240/457 (52%), Positives = 339/457 (74%), Gaps = 4/457 (0%)

Query: 27  LTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPS 86
           LT ++L+ VDD   A++ + P S R+I+W + A     + WA +AE+D+VT G GKV+PS
Sbjct: 5   LTTQDLEMVDDVYGAMMTDAPTSHRLIIWALAALAFSFLVWAYFAELDRVTTGTGKVIPS 64

Query: 87  SQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQL 146
           SQVQVIQ+L+GG++K++ VREG  V KGQ L+ +DDTRFRSDF ++EQ+V +L A+V++L
Sbjct: 65  SQVQVIQSLDGGIMKELYVREGMTVTKGQPLVRIDDTRFRSDFAQQEQEVYSLQANVIRL 124

Query: 147 SASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQ 206
            A ++S+ I +     +W   V++    L FPP L++S+ DL+ERQRD+Y   LDNL NQ
Sbjct: 125 RAELNSITISD--VAADWREQVKIAKQPLQFPPELTESEHDLIERQRDEYSGRLDNLSNQ 182

Query: 207 LSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQL 266
           L +L++QI+QKQQ+  E  ++I  L  S+    +EL++T PLA++G+VP++ELLKL+R +
Sbjct: 183 LEILARQIQQKQQETEELASKINTLTTSFQLVTRELELTRPLADKGIVPEVELLKLERNV 242

Query: 267 NDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGL 326
           ND R EL+S  L  P LK++  EA+L R  A   +  E + +LN+ Q +LS + E+ VG 
Sbjct: 243 NDIRGELSSLRLLRPKLKASQDEAILKRREAVFVYAAEARTQLNEMQTRLSRINEAQVGA 302

Query: 327 EDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLR 386
            DKV++  +VSPV GT+KT+++NT+GGV+QPG++IIEIVP+ED LL+E +I P+DI FL 
Sbjct: 303 RDKVSKAEIVSPVNGTIKTVHINTLGGVVQPGIDIIEIVPSEDQLLIETKIIPKDIAFLH 362

Query: 387 PDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQN--L 444
           P LPA+VK +AYDFTRYGGL G +EHISADTTQDEEGNSFYLVRVRT+ ++L  D    +
Sbjct: 363 PGLPAVVKVTAYDFTRYGGLNGVVEHISADTTQDEEGNSFYLVRVRTELSSLTKDDGTLM 422

Query: 445 PIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           PIIPGM  +VD+ITG+R+VL+Y+L PIL A+  ALRE
Sbjct: 423 PIIPGMLTTVDVITGQRSVLEYILNPILRARDTALRE 459