Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 466 a.a., type I secretion membrane fusion protein, HlyD family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  322 bits (826), Expect = 1e-92
 Identities = 181/464 (39%), Positives = 281/464 (60%), Gaps = 21/464 (4%)

Query: 19  MSNRSYNKLTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTV 78
           + N   + +  ++L+++ +  AAL       A ++   + AF ++ I WA++A +D+VT 
Sbjct: 22  LGNGGAHGVRRDDLEFMSEVDAALHRKGHPLAFLLSASLGAFLLVFIVWAAFASLDEVTR 81

Query: 79  GQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVAN 138
           GQ +V+PS ++Q IQNLEGG++ +I VREG+ V+KG  L+ LD+    S FR+   +   
Sbjct: 82  GQAQVIPSQRIQEIQNLEGGIISEIFVREGQIVEKGTVLVRLDNESAASFFRDAVSKSYE 141

Query: 139 LTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQ 198
             A++ +L   ++                         +PP +    P +V  Q   +  
Sbjct: 142 HMAAIARLEGEMAG--------------------KDPVYPPEVVQKAPQVVADQTSIHNA 181

Query: 199 DLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIE 258
               L  +LSVL  Q+ QK+Q++ E   R   L  S   A+++ DI  PL  + +  K++
Sbjct: 182 RKRQLELELSVLESQLSQKRQEVDEMVGRQGQLGASLRVAQEQRDIARPLVEKQIYSKVD 241

Query: 259 LLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSS 318
            L L++++   R +++S  + IP  +SAV E      +   + R++  +++N+ + +L+S
Sbjct: 242 YLSLEQRVIQLRGDISSLAVNIPKARSAVHEVEQRLSHRKAEVRSQAVEEINKRRVELNS 301

Query: 319 LTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIA 378
           L E+    ED+V RT + +PV GTVK + +NT GGV++PG +I+E+VP +DTLLVEA+I 
Sbjct: 302 LRETLSAGEDRVTRTDLRAPVRGTVKRIIINTQGGVVKPGESILELVPLDDTLLVEARIR 361

Query: 379 PQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTL 438
           P DI FL P   AIVK +AYDF+ YGGLE  LE ISADT +D +G  +YLV++RTK+  +
Sbjct: 362 PADIAFLHPGQKAIVKVTAYDFSIYGGLEAGLEQISADTIEDRKGEFYYLVKLRTKKNAI 421

Query: 439 GH-DQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
            +  +NLPI+PGMTA+VDI+TGK+TVLDYLLKPIL AQ NALRE
Sbjct: 422 TYRGENLPIMPGMTATVDILTGKKTVLDYLLKPILKAQQNALRE 465