Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., toxin secretion, membrane fusion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 101/437 (23%), Positives = 190/437 (43%), Gaps = 68/437 (15%)

Query: 48  HSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVRE 107
           ++  I + ++V   IL + ++ +A  + V   +G +VP   V        G V  + V+E
Sbjct: 30  YTISIAILLIVTAIILFLYFSHYARKETV---RGYLVPDKGVIKTYANRIGNVDILHVKE 86

Query: 108 GEQVQKGQQLI-LLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWAN 166
           G  V  G  L+ ++  +   S F   E  +     S L+   SI +  +D N E  N A 
Sbjct: 87  GSDVNAGDPLVTVIIRSSMASGFELSETLI-----SELKQQQSILNQELDNNIE-LNAAE 140

Query: 167 SVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEA 226
           +++L   +L+          DL E  +   RQ    L ++L++  Q  ++KQ D +  + 
Sbjct: 141 TLRLK-KRLS----------DLSESMKVLSRQK-QLLADKLNI--QVAQKKQHDKLYKDG 186

Query: 227 RIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQ--RQLNDTRRELTSTELKIPVLK 284
            +  L    DY   +L +++ +  +  V  +E  K+   R+LN T  EL S   +  + +
Sbjct: 187 YLSEL----DY---QLQLSKLIEVKQEVENLESNKISIDRELNQTHAELVSLPFQFNLKQ 239

Query: 285 SAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVK 344
           S V            K +++ Q +LN+A++  +                V+ +  +GTV 
Sbjct: 240 SDVH-----------KRQSDIQRQLNEAENSYTF---------------VIRAQESGTVA 273

Query: 345 TLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYG 404
            + V   G  I     ++ I+P   +L+ E  +  +   F++    A ++F A+ + R+G
Sbjct: 274 AVSV-VEGEFIASNRPLMSIIPKGSSLVAELLLPTRSAGFVKQGDEARLRFDAFPYQRFG 332

Query: 405 GLEGTLEHISADTTQDEEGN-----SFYLVRVRTK---ETTLGHDQNLPIIPGMTASVDI 456
            L   +  +      D E +     S  + R++T    +    + +  P+  GM    DI
Sbjct: 333 FLHSEVLRVDKALLLDGEADLPVKLSEPVYRIKTTLSAQDMQAYGEAFPLKSGMLLEADI 392

Query: 457 ITGKRTVLDYLLKPILS 473
           +  +RT+LD+LL PI S
Sbjct: 393 VLDRRTLLDWLLDPIYS 409