Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  463 bits (1191), Expect = e-135
 Identities = 223/457 (48%), Positives = 332/457 (72%), Gaps = 4/457 (0%)

Query: 27  LTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPS 86
           LTA +LD VDD   A++ + P   R+I+W + A     + WA +AE+D VT G GKV+PS
Sbjct: 29  LTANDLDMVDDVYGAMMTDAPSGHRLIIWALAAMVACFLLWAGFAELDTVTTGSGKVIPS 88

Query: 87  SQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQL 146
           SQVQVIQ+L+GG+++++ VR+G+ V KGQ L+ +DDTRFRSDF ++EQ+V  L  + +++
Sbjct: 89  SQVQVIQSLDGGIMQELFVRDGDLVTKGQPLVRIDDTRFRSDFAQQEQEVFGLKTNAIRM 148

Query: 147 SASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQ 206
            A + S++I +   +  W   V++    L FP  +  ++P LV+RQ+++Y   LDNL NQ
Sbjct: 149 RAELDSILISDMTSD--WREQVKITKKDLVFPDSIIQAEPALVKRQQEEYSGRLDNLSNQ 206

Query: 207 LSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQL 266
           L +L +QI+Q+QQ++ +  ++   L  S     +EL++T PLA +G+VP++ELLKL+R +
Sbjct: 207 LEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLERAV 266

Query: 267 NDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGL 326
           ND + EL S  L  P LK+A+ EA+L R  A   +  + + +LN+ Q +LS + E+ VG 
Sbjct: 267 NDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQVGA 326

Query: 327 EDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLR 386
           +DKV++ ++ SPV GT+KT+++NT+GGV+QPG++IIEIVP+ED LL+E +I P+DI FL 
Sbjct: 327 QDKVSKAIITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLH 386

Query: 387 PDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQ--NL 444
             LPA+VK +AYDFTRYGGL+GT+EHISADT+QDEEGNSFYL++VRT+E++L  D    +
Sbjct: 387 TGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDEEGNSFYLIKVRTEESSLIKDDGTQM 446

Query: 445 PIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           PIIPGM  +VD+ITG+R++L+Y+L PIL A+  ALRE
Sbjct: 447 PIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRE 483