Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  190 bits (482), Expect = 1e-52
 Identities = 134/473 (28%), Positives = 226/473 (47%), Gaps = 43/473 (9%)

Query: 19  MSNRSYNKLTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFI-----LAIAWASWAEI 73
           M++R  N  +  E ++         +  P   RII    + +FI     +   W+ +  I
Sbjct: 1   MNDRQLNHRSLPEHEFTQ------AIEAPAEKRIIK--QITYFIAGSVFIMFVWSLFTNI 52

Query: 74  DKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFRERE 133
           +++   +G+V+P    QVIQ+  GG +  ILV EG+ V+KG  L        ++   E E
Sbjct: 53  EEIAKAKGQVIPLGHQQVIQSFSGGTLASILVSEGDLVKKGDVLANFIAIDSQAAAEELE 112

Query: 134 QQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQR 193
            + ANL   + + SA I S        E N+A+ ++              S P+LV+   
Sbjct: 113 SKQANLVLKIERYSAFIES-------REANFASYLE--------------SHPNLVKG-- 149

Query: 194 DQYRQDLDNLRNQLSVLSQ----QIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLA 249
             +  DL+ + N+   + Q    +I + + +L   +  I  L+     A++ +++ E + 
Sbjct: 150 --HISDLERMNNEKQAIIQSSLAEIAKSKAELASLDQEIPPLKHQITSAQQTINMMESIK 207

Query: 250 NEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKL 309
               V K+ +L+ Q++L+   REL S E K  VL   +                E  +  
Sbjct: 208 ESQAVSKLTMLESQQKLDSYIRELKSMEGKQQVLARDIENLQRQLEQKQATLLKEVGEAR 267

Query: 310 NQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTED 369
             AQ +L  +T      + +V +  + SPV G ++++   + G VIQPG  +  IVPT  
Sbjct: 268 TDAQAELLGITARLKSSDSQVQQNTITSPVDGIIQSIPNTSSGSVIQPGGTVAVIVPTTP 327

Query: 370 TLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLV 429
           T L+EA+++P+DI F+     A +K  A+D++RYG L+G ++ IS  T  DE+G  FY V
Sbjct: 328 TALLEAKLSPRDIGFVSVGQKARIKIDAFDYSRYGALDGIVKRISPSTDADEKGGVFYKV 387

Query: 430 RVRTKETTLG-HDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           ++   +   G     L +IPGMT   DI+TG +TV  YL KP+ +  + A  E
Sbjct: 388 QISIDKPYFGDQPDKLELIPGMTGEADIVTGDKTVFQYLWKPVFTNVTEAFGE 440