Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., type I secretion membrane fusion protein, HlyD family from Sphingomonas koreensis DSMZ 15582

 Score =  235 bits (599), Expect = 2e-66
 Identities = 156/421 (37%), Positives = 227/421 (53%), Gaps = 68/421 (16%)

Query: 65  IAWASWAEIDKVTVGQGKVVPSSQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTR 124
           + WA +  +D+VT+G GKV P+S+ QVIQ+LEGG+V  I V EG+ VQ  Q+L  LD  R
Sbjct: 46  LIWAYFGTLDEVTIGAGKVTPTSRSQVIQSLEGGIVDGIFVHEGDIVQPRQKLATLDRAR 105

Query: 125 FRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDS 184
           F S   E E +   L A+  +L A IS                           P  S++
Sbjct: 106 FSSTLGEAEAKARTLEATAARLEAEISGGT------------------------PQFSEA 141

Query: 185 QPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDI 244
                       RQ    +  +L +L      ++++L  A A   +LRQS    ++EL +
Sbjct: 142 -----------VRQTPGLMARELKLLGS----RRENLQVATA---SLRQSLALVRRELAM 183

Query: 245 TEPLANEGVVPKIELLKLQRQLNDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTE 304
           T PL   G    +E+++LQRQ N+ + +L S                        +F  +
Sbjct: 184 TAPLVELGAANNVEVIRLQRQENELQAKLDSLR---------------------NQFVID 222

Query: 305 QQDKLNQAQDKLSSLTESAVGLEDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEI 364
                 +A+ +L  + +   G  D+++RT + SPV G VK L V+T+GGVIQPG +++EI
Sbjct: 223 ANADYAKAKSELEVVNQVMSGRRDQLDRTTIASPVRGIVKNLEVSTIGGVIQPGGSLMEI 282

Query: 365 VPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDE--E 422
           VP  D LL+EA+++P+DI F+RP LPA +K +AYD + YG LEGT++ IS DT QDE   
Sbjct: 283 VPLGDELLIEARVSPRDIAFIRPGLPATIKITAYDPSIYGALEGTVDRISPDTLQDEVHR 342

Query: 423 GNSFYLVRVRTKETTL--GHDQNLPIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALR 480
              +Y V +RTK  +L     +   I+PGM A+V+I TG++TVLDYLLKPI  AQ  A+R
Sbjct: 343 DQVYYRVFIRTKRASLRTRDGREHAIMPGMVATVEIRTGRKTVLDYLLKPINKAQ-EAMR 401

Query: 481 E 481
           E
Sbjct: 402 E 402