Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., putative hemolysin secretion protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 86/430 (20%), Positives = 178/430 (41%), Gaps = 47/430 (10%)

Query: 55  WVMVAFFILAIAWASWAEIDK---VTVGQGKV-VPSSQVQVIQNLEGGLVKQILVREGEQ 110
           WV +A  + A  +  +  I K   +  GQ K+   +  V+++ N  G L+  +  +  E+
Sbjct: 8   WVALAVIVFAALFLLFGWIIKYPDMVTGQIKINAQNPTVRLVANSTGNLLL-LSHKAQEE 66

Query: 111 VQKGQQLILLDDTRFRSDFREREQQVANLTASVLQLSASISSVIIDENFEEKNWANSVQL 170
           V+KG+ + ++ +     D R+    +  +      L A      + + F +K +   +  
Sbjct: 67  VKKGEYIAVVQNPASTEDVRKIADLINRIDFDGTHLLA------LKDTFPDKVYLGEINP 120

Query: 171 DYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQLSVLSQQIKQKQQDLIEAEARIIN 230
            Y   AF   L  +Q D +  Q++ Y +  +N+       +  I+ K++ + EAE     
Sbjct: 121 QY--YAFLAALK-AQCDYL--QQNVYEKQRENI-------TTSIEWKKKIVREAEDSQKA 168

Query: 231 LRQSYDYAKK------ELDITEPLANEGVVPKIE--LLKLQRQLNDTRRELTSTELKIPV 282
            +   D A+K       LD  E    E    +I+   L   +++ +  RE+ ST ++I  
Sbjct: 169 AKDRMDVARKWLKRYVSLDQQEIATYEYETDQIKNNYLTTVQEVQNINREIASTRMQIT- 227

Query: 283 LKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVG-LEDKVNRTVVVSPVTG 341
                        +  ++   EQ +K  + + +L S  ++ +  +     + V  +P  G
Sbjct: 228 ----------EAYHRLEQLEVEQLEKERELKVELLSTHQNLIANMAAWEQKYVFKAPFDG 277

Query: 342 TVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLRPDLPAIVKFSAYDFT 401
            V+ L   + G  +Q G  +  ++P E+ +  +  +       ++ +   ++K   Y + 
Sbjct: 278 KVEFLKFISDGQFVQAGEAVFGVIPKENHIYGQVLLPANGAGKVKENSKVVIKLENYPYM 337

Query: 402 RYGGLEGTLEHISADTTQDEEGN---SFYLVRVRTKE-TTLGHDQNLPIIPGMTASVDII 457
            YG +EG +  IS  T   + G      YL+ V      T  +++ L     +  + DII
Sbjct: 338 EYGYIEGYVSSISLVTQTQKTGEKTIETYLINVELPNGLTTNYEETLDFKYELGGTADII 397

Query: 458 TGKRTVLDYL 467
              R +++ L
Sbjct: 398 VKDRRLIERL 407