Pairwise Alignments

Query, 481 a.a., HlyD family type I secretion periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., HlyD family type I secretion membrane fusion protein (RefSeq) from Shewanella sp. ANA-3

 Score =  466 bits (1199), Expect = e-136
 Identities = 224/457 (49%), Positives = 334/457 (73%), Gaps = 4/457 (0%)

Query: 27  LTAEELDYVDDKTAALLLNTPHSARIILWVMVAFFILAIAWASWAEIDKVTVGQGKVVPS 86
           LTA +LD VDD   A++ + P   R+I+W + A     + WA +A++DKVT G GKV+PS
Sbjct: 5   LTANDLDMVDDVYGAIMTDAPSGHRLIIWALAAMVACFLLWAGFAKLDKVTTGSGKVIPS 64

Query: 87  SQVQVIQNLEGGLVKQILVREGEQVQKGQQLILLDDTRFRSDFREREQQVANLTASVLQL 146
           SQVQVIQ+L+GG+++++ VREG+ V KGQ L+ +DDTRFRSDF ++EQ+V  L  + +++
Sbjct: 65  SQVQVIQSLDGGIMQELFVREGDIVTKGQPLVRIDDTRFRSDFAQQEQEVLGLKTNAIRM 124

Query: 147 SASISSVIIDENFEEKNWANSVQLDYSKLAFPPVLSDSQPDLVERQRDQYRQDLDNLRNQ 206
            A + S++I +   +  W   V++    L FP  +++++P LV RQ+++Y   LDNL NQ
Sbjct: 125 RAELDSILISDMTSD--WREQVKITKKALVFPDSITEAEPALVRRQQEEYNGRLDNLSNQ 182

Query: 207 LSVLSQQIKQKQQDLIEAEARIINLRQSYDYAKKELDITEPLANEGVVPKIELLKLQRQL 266
           L +L +QI+Q+QQ++ +  ++   L  S     +EL++T PLA +G+VP++ELLKL+R +
Sbjct: 183 LEILVRQIQQRQQEIDDLASKTTTLTTSMQLISRELELTRPLAKKGIVPEVELLKLERAV 242

Query: 267 NDTRRELTSTELKIPVLKSAVREAMLSRINAAQKFRTEQQDKLNQAQDKLSSLTESAVGL 326
           ND + EL S  L  P LK+A+ EA+L R  A   +  + + +LN+ Q +LS + E+ VG 
Sbjct: 243 NDAQGELNSLRLLRPKLKAALDEAILKRREAVFVYAADLRAQLNETQTRLSRMNEAQVGA 302

Query: 327 EDKVNRTVVVSPVTGTVKTLYVNTVGGVIQPGMNIIEIVPTEDTLLVEAQIAPQDIVFLR 386
           +DKV++ V+ SPV GT+KT+++NT+GGV+QPG++IIEIVP+ED LL+E +I P+DI FL 
Sbjct: 303 QDKVSKAVITSPVNGTIKTVHINTLGGVVQPGVDIIEIVPSEDQLLIETKILPKDIAFLH 362

Query: 387 PDLPAIVKFSAYDFTRYGGLEGTLEHISADTTQDEEGNSFYLVRVRTKETTLGHDQ--NL 444
             LPA+VK +AYDFTRYGGL+GT+EHISADT+QD+EGNSFYL++VRT+E++L  D    +
Sbjct: 363 TGLPAVVKVTAYDFTRYGGLKGTVEHISADTSQDDEGNSFYLIKVRTEESSLIKDDGTQM 422

Query: 445 PIIPGMTASVDIITGKRTVLDYLLKPILSAQSNALRE 481
           PIIPGM  +VD+ITG+R++L+Y+L PIL A+  ALRE
Sbjct: 423 PIIPGMLTTVDVITGQRSILEYILNPILRAKDTALRE 459