Pairwise Alignments

Query, 287 a.a., AraC family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 291 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N2E2

 Score = 80.9 bits (198), Expect = 3e-20
 Identities = 72/277 (25%), Positives = 122/277 (44%), Gaps = 19/277 (6%)

Query: 16  HAPEAGKASSIAKVLSPKPAELITLPSHMACHDHSYTQIVIGLKGQAEFEVRGMGNIVGP 75
           H+ E G   + A   +   A     P+H     H+ +  + G  G   F          P
Sbjct: 23  HSAELGDGMAAALWSNHHDARDYEAPTH-----HTLSCYIAG--GTGTFRRERPDTTGAP 75

Query: 76  GQGCVVTSGSDHAFGGVVGQSDILVLNMPVPSDDDPL-----LLRKLNELAVGDVYFQLD 130
            + C++ +G + A+   V   DI + ++   ++   L     L R+  ++ + +  F  D
Sbjct: 76  DKLCILPAGHESAW---VINGDIRLAHLYFSAEQFALGCITLLDREPRQVQLHEETFLDD 132

Query: 131 G-QIQRLIQMLVQEMQASPDDLLLGRACNDTVVALLQRHISALASVHKE---SRFDMEVV 186
             Q  R  Q++        + LL     +D +  LL   +     +  +   +     ++
Sbjct: 133 PRQAHRFRQLIALNWDEPGERLLTTSLAHDLLNHLLLSQVGQRQGLRLKGGLAAHQRRLL 192

Query: 187 DRYIEQHLAHRISVAQLAGSVFLSESQFHVLFKEQMGLTPHQYVLNKRVDMAKKLIEQGR 246
             Y++ HLA  IS+ QLA    LSE  F  +F+E  GL PHQYVL +R+  A+ L+    
Sbjct: 193 VDYVDSHLADAISLGQLAALCALSEYHFARMFRESFGLPPHQYVLARRLTCARHLLRTTS 252

Query: 247 LNLGQVAELTGFSNQSTFTHTFSRLHGISPSQYKRRF 283
             LG VA   GF++ S FT+ F +  G SP +Y++ F
Sbjct: 253 QPLGDVALACGFASASHFTNRFRQTLGASPGEYRQAF 289